PG2021 StartR

Summary

• Published as Voigt et al., 2019
• Explore using cellxgene
• Download Seurat .rds object

Load packages

library( "Seurat" )
library( "scater" )

Load data

sce <- readRDS( "/home/idies/workspace/practical_genomics/day1/retina.rds" )
sce <- as.SingleCellExperiment( sce )

Check data

sce

Visualize RHO expression

plotUMAP( sce, colour_by="RHO" )

Document software

sessionInfo()