project sample experiment run read_count_as_reported_by_sra reads_downloaded proportion_of_reads_reported_by_sra_downloaded paired_end sra_misreported_paired_end mapped_read_count auc sharq_beta_tissue sharq_beta_cell_type biosample_submission_date biosample_publication_date biosample_update_date avg_read_length geo_accession bigwig_file title characteristics SRP003754 SRS301460 SRX130220 SRR446301 30127794 30127794 1 FALSE FALSE 25929682 673030372 cervix s3 2012-03-19T10:38:02.293 2012-03-19T12:25:03.880 2014-08-27T03:59:54.067 36 GSM897069 SRR446301.bw CSHL_RnaSeq_HeLa-S3_cytosol_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 011C,012C,011C,012C", "labexpid: LID21145,LID21148,LID21145,LID21148", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1,2", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 011C", "labexpid: LID21145", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1") SRP003754 SRS301460 SRX130220 SRR446302 29962719 29962719 1 FALSE FALSE 26643326 671880825 cervix s3 2012-03-19T10:38:02.293 2012-03-19T12:25:03.880 2014-08-27T03:59:54.067 36 GSM897069 SRR446302.bw CSHL_RnaSeq_HeLa-S3_cytosol_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 011C,012C,011C,012C", "labexpid: LID21145,LID21148,LID21145,LID21148", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1,2", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 011C", "labexpid: LID21145", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1") SRP003754 SRS301461 SRX130221 SRR446303 32182563 32182563 1 FALSE FALSE 28880704 796724658 brain sh 2012-03-19T10:38:02.330 2012-03-19T12:25:03.880 2014-08-27T03:59:55.007 36 GSM897070 SRR446303.bw CSHL_RnaSeq_SK-N-SH_RA_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 020WC,019WC,020WC,019WC", "labexpid: LID20747,LID20748,LID20748,LID20747", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 019WC", "labexpid: LID20747", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1") SRP003754 SRS301461 SRX130221 SRR446304 32266231 32266231 1 FALSE FALSE 29092841 797703000 brain sh 2012-03-19T10:38:02.330 2012-03-19T12:25:03.880 2014-08-27T03:59:55.007 36 GSM897070 SRR446304.bw CSHL_RnaSeq_SK-N-SH_RA_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 020WC,019WC,020WC,019WC", "labexpid: LID20747,LID20748,LID20748,LID20747", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 019WC", "labexpid: LID20747", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1") SRP003754 SRS301462 SRX130222 SRR446305 33174220 33174220 1 FALSE FALSE 32816912 1092655779 stem cell esc 2012-03-19T10:38:02.367 2012-03-19T12:25:03.880 2014-08-27T04:07:27.803 36 GSM897071 SRR446305.bw CSHL_RnaSeq_H1-hESC_nucleus_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 006N", "labexpid: LID20907", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "cell sex: M", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 006N", "labexpid: LID20907", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 2") SRP003754 SRS301463 SRX130223 SRR446306 16110202 16110202 1 FALSE FALSE 14805645 363524697 stem cell esc 2012-03-19T10:38:02.403 2012-03-19T12:25:03.880 2014-08-27T04:07:28.110 36 GSM897072 SRR446306.bw CSHL_RnaSeq_H1-hESC_cytosol_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 006C", "labexpid: LID20908", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "cell sex: M", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 006C", "labexpid: LID20908", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 2") SRP003754 SRS301464 SRX130224 SRR446307 29234304 29234304 1 FALSE FALSE 27513915 668353819 stem cell esc 2012-03-19T10:38:02.440 2012-03-19T12:25:03.880 2014-08-27T04:07:28.407 36 GSM897073 SRR446307.bw CSHL_RnaSeq_H1-hESC_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 006WC,005WC,006WC,005WC", "labexpid: LID20906,LID20905,LID20906,LID20905", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 005WC", "labexpid: LID20905", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1") SRP003754 SRS301464 SRX130224 SRR446308 27202867 27202867 1 FALSE FALSE 24973296 591840277 stem cell esc 2012-03-19T10:38:02.440 2012-03-19T12:25:03.880 2014-08-27T04:07:28.407 36 GSM897073 SRR446308.bw CSHL_RnaSeq_H1-hESC_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 006WC,005WC,006WC,005WC", "labexpid: LID20906,LID20905,LID20906,LID20905", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 005WC", "labexpid: LID20905", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1") SRP003754 SRS301465 SRX130225 SRR446309 30197795 30197795 1 FALSE FALSE 25866954 679153498 lung esc 2012-03-19T10:38:02.477 2012-03-19T12:25:03.880 2014-08-27T04:11:21.943 36 GSM897074 SRR446309.bw CSHL_RnaSeq_AG04450_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 018WC,017WC,018WC,017WC", "labexpid: LID20745,LID20746,LID20745,LID20746", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 017WC", "labexpid: LID20745", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1") SRP003754 SRS301465 SRX130225 SRR446310 32544195 32544195 1 FALSE FALSE 27953630 732389631 lung esc 2012-03-19T10:38:02.477 2012-03-19T12:25:03.880 2014-08-27T04:11:21.943 36 GSM897074 SRR446310.bw CSHL_RnaSeq_AG04450_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 018WC,017WC,018WC,017WC", "labexpid: LID20745,LID20746,LID20745,LID20746", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 017WC", "labexpid: LID20745", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1") SRP003754 SRS301466 SRX130226 SRR446311 32436891 32436891 1 FALSE FALSE 30142512 945722846 blood vessel huvec 2012-03-19T10:38:02.513 2012-03-19T12:25:03.880 2014-08-27T04:11:22.223 36 GSM897075 SRR446311.bw CSHL_RnaSeq_HUVEC_nucleus_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 029N,030N,030N,029N", "labexpid: LID21056,LID21058,LID21058,LID21056", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 3,4", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 029N", "labexpid: LID21056", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 3") SRP003754 SRS301466 SRX130226 SRR446312 23384094 23384094 1 FALSE FALSE 22128958 738408908 blood vessel huvec 2012-03-19T10:38:02.513 2012-03-19T12:25:03.880 2014-08-27T04:11:22.223 36 GSM897075 SRR446312.bw CSHL_RnaSeq_HUVEC_nucleus_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 029N,030N,030N,029N", "labexpid: LID21056,LID21058,LID21058,LID21056", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 3,4", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 029N", "labexpid: LID21056", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 3") SRP003754 SRS301467 SRX130227 SRR446313 28789736 28789736 1 FALSE FALSE 28522777 999565019 skin esc 2012-03-19T10:38:02.550 2012-03-19T12:25:03.880 2014-08-27T04:11:22.533 36 GSM897076 SRR446313.bw CSHL_RnaSeq_NHEK_nucleus_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "cell sex: F", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 028N,027N,027N,028N", "labexpid: LID21001,LID21003,LID21001,LID21003", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 3,4", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 027N", "labexpid: LID21001", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 3") SRP003754 SRS301467 SRX130227 SRR446314 33194171 33194171 1 FALSE FALSE 32688623 1139171894 skin esc 2012-03-19T10:38:02.550 2012-03-19T12:25:03.880 2014-08-27T04:11:22.533 36 GSM897076 SRR446314.bw CSHL_RnaSeq_NHEK_nucleus_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "cell sex: F", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 028N,027N,027N,028N", "labexpid: LID21001,LID21003,LID21001,LID21003", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 3,4", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 027N", "labexpid: LID21001", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 3") SRP003754 SRS301468 SRX130228 SRR446315 29822364 29822364 1 FALSE FALSE 28878976 923324878 skin bj 2012-03-19T10:38:02.583 2012-03-19T12:25:03.880 2014-08-27T04:11:22.800 36 GSM897077 SRR446315.bw CSHL_RnaSeq_BJ_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "cell description: skin fibroblast, \"The line was established from skin taken from normal foreskin.\" - ATCC. (PMID: 9916803)", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 037WC,038WC,037WC,038WC", "labexpid: LID20909,LID20909,LID20910,LID20910", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1,2", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 037WC", "labexpid: LID20909", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1") SRP003754 SRS301468 SRX130228 SRR446316 28831026 28831026 1 FALSE FALSE 26747091 668245478 skin bj 2012-03-19T10:38:02.583 2012-03-19T12:25:03.880 2014-08-27T04:11:22.800 36 GSM897077 SRR446316.bw CSHL_RnaSeq_BJ_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "cell description: skin fibroblast, \"The line was established from skin taken from normal foreskin.\" - ATCC. (PMID: 9916803)", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 037WC,038WC,037WC,038WC", "labexpid: LID20909,LID20909,LID20910,LID20910", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1,2", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 037WC", "labexpid: LID20909", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1") SRP003754 SRS301469 SRX130229 SRR446317 36716973 36716973 1 FALSE FALSE 32497914 931632466 skin esc 2012-03-19T10:38:02.620 2012-03-19T12:25:03.880 2014-08-27T04:11:23.307 36 GSM897078 SRR446317.bw CSHL_RnaSeq_NHEK_cytosol_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 027C,027C,028C,028C", "labexpid: LID21002,LID21002,LID21004,LID21004", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 3,4", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 027C", "labexpid: LID21002", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 3") SRP003754 SRS301469 SRX130229 SRR446318 34736981 34736981 1 FALSE FALSE 29221538 765957821 skin esc 2012-03-19T10:38:02.620 2012-03-19T12:25:03.880 2014-08-27T04:11:23.307 36 GSM897078 SRR446318.bw CSHL_RnaSeq_NHEK_cytosol_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 027C,027C,028C,028C", "labexpid: LID21002,LID21002,LID21004,LID21004", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 3,4", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 027C", "labexpid: LID21002", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 3") SRP003754 SRS301470 SRX130230 SRR446319 30180398 30180398 1 FALSE FALSE 26052930 670191546 cervix s3 2012-03-19T10:38:02.657 2012-03-19T12:25:03.880 2014-08-27T04:11:23.600 36 GSM897079 SRR446319.bw CSHL_RnaSeq_HeLa-S3_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 011WC,012WC,012WC,011WC", "labexpid: LID21143,LID21146,LID21146,LID21143", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 011WC", "labexpid: LID21143", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1") SRP003754 SRS301470 SRX130230 SRR446320 29539052 29539052 1 FALSE FALSE 26668740 629668740 cervix s3 2012-03-19T10:38:02.657 2012-03-19T12:25:03.880 2014-08-27T04:11:23.600 36 GSM897079 SRR446320.bw CSHL_RnaSeq_HeLa-S3_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 011WC,012WC,012WC,011WC", "labexpid: LID21143,LID21146,LID21146,LID21143", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 011WC", "labexpid: LID21143", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1") SRP003754 SRS301471 SRX130231 SRR446321 26965537 26965537 1 FALSE FALSE 26602493 944676305 cervix s3 2012-03-19T10:38:02.693 2012-03-19T12:25:03.880 2014-08-27T04:11:23.917 36 GSM897080 SRR446321.bw CSHL_RnaSeq_HeLa-S3_nucleus_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 011N,012N,012N,011N", "labexpid: LID21144,LID21147,LID21144,LID21147", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1,2", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 011N", "labexpid: LID21144", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1") SRP003754 SRS301471 SRX130231 SRR446322 24646148 24646148 1 FALSE FALSE 23745472 832394721 cervix s3 2012-03-19T10:38:02.693 2012-03-19T12:25:03.880 2014-08-27T04:11:23.917 36 GSM897080 SRR446322.bw CSHL_RnaSeq_HeLa-S3_nucleus_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 011N,012N,012N,011N", "labexpid: LID21144,LID21147,LID21144,LID21147", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1,2", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 011N", "labexpid: LID21144", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1") SRP003754 SRS301472 SRX130232 SRR446323 21930821 21930821 1 FALSE FALSE 19748050 477191603 breast mcf 2012-03-19T10:38:02.730 2012-03-19T12:25:03.880 2014-08-27T04:11:24.220 36 GSM897081 SRR446323.bw CSHL_RnaSeq_MCF-7_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 089WC,090WC,089WC,090WC", "labexpid: LID47160,LID47161,LID47161,LID47160", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 015WC,016WC", "labexpid: LID20743,LID20744", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads") SRP003754 SRS301472 SRX130232 SRR446324 32396793 32396793 1 FALSE FALSE 29166928 703760829 breast mcf 2012-03-19T10:38:02.730 2012-03-19T12:25:03.880 2014-08-27T04:11:24.220 36 GSM897081 SRR446324.bw CSHL_RnaSeq_MCF-7_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 089WC,090WC,089WC,090WC", "labexpid: LID47160,LID47161,LID47161,LID47160", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 015WC,016WC", "labexpid: LID20743,LID20744", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads") SRP003754 SRS301472 SRX130232 SRR446325 108799493 108799493 1 FALSE FALSE 84610883 4287753476 breast mcf 2012-03-19T10:38:02.730 2012-03-19T12:25:03.880 2014-08-27T04:11:24.220 101 GSM897081 SRR446325.bw CSHL_RnaSeq_MCF-7_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 089WC,090WC,089WC,090WC", "labexpid: LID47160,LID47161,LID47161,LID47160", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 015WC,016WC", "labexpid: LID20743,LID20744", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads") SRP003754 SRS301472 SRX130232 SRR446326 103315171 103315171 1 FALSE FALSE 80209632 3968700353 breast mcf 2012-03-19T10:38:02.730 2012-03-19T12:25:03.880 2014-08-27T04:11:24.220 101 GSM897081 SRR446326.bw CSHL_RnaSeq_MCF-7_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 089WC,090WC,089WC,090WC", "labexpid: LID47160,LID47161,LID47161,LID47160", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 015WC,016WC", "labexpid: LID20743,LID20744", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads") SRP003754 SRS301473 SRX130233 SRR446327 31299268 31299268 1 FALSE FALSE 26508662 732331363 liver hepg2 2012-03-19T10:38:02.767 2012-03-19T12:25:03.880 2014-08-27T04:11:24.520 36 GSM897082 SRR446327.bw CSHL_RnaSeq_HepG2_cytosol_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "cell description: hepatocellular carcinoma", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 013C,014C,014C,013C", "labexpid: LID44464,LID44465,LID44465,LID44464", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1,2", "localization description: The fluid between the cells outer membrane and the nucleus", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 013C", "labexpid: LID44464", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1") SRP003754 SRS301473 SRX130233 SRR446328 28449186 28449186 1 FALSE FALSE 21891966 563043408 liver hepg2 2012-03-19T10:38:02.767 2012-03-19T12:25:03.880 2014-08-27T04:11:24.520 36 GSM897082 SRR446328.bw CSHL_RnaSeq_HepG2_cytosol_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "cell description: hepatocellular carcinoma", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 013C,014C,014C,013C", "labexpid: LID44464,LID44465,LID44465,LID44464", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1,2", "localization description: The fluid between the cells outer membrane and the nucleus", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 013C", "labexpid: LID44464", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1") SRP003754 SRS301474 SRX130234 SRR446329 31356824 31356824 1 FALSE FALSE 28310119 745950366 epithelium a549 2012-03-19T10:38:02.803 2012-03-19T12:25:03.880 2014-08-27T04:11:24.850 36 GSM897083 SRR446329.bw CSHL_RnaSeq_A549_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 087WC,088WC,087WC,088WC", "labexpid: LID47039,LID47039,LID47040,LID47040", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 021WC", "labexpid: LID20749", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1") SRP003754 SRS301474 SRX130234 SRR446330 32697198 32697198 1 FALSE FALSE 29995230 768516106 epithelium a549 2012-03-19T10:38:02.803 2012-03-19T12:25:03.880 2014-08-27T04:11:24.850 36 GSM897083 SRR446330.bw CSHL_RnaSeq_A549_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 087WC,088WC,087WC,088WC", "labexpid: LID47039,LID47039,LID47040,LID47040", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 021WC", "labexpid: LID20749", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1") SRP003754 SRS301474 SRX130234 SRR446331 107320921 107320921 1 FALSE FALSE 89754635 4312062406 epithelium a549 2012-03-19T10:38:02.803 2012-03-19T12:25:03.880 2014-08-27T04:11:24.850 101 GSM897083 SRR446331.bw CSHL_RnaSeq_A549_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 087WC,088WC,087WC,088WC", "labexpid: LID47039,LID47039,LID47040,LID47040", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 021WC", "labexpid: LID20749", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1") SRP003754 SRS301474 SRX130234 SRR446332 109672565 109672565 1 FALSE FALSE 88099020 4149106269 epithelium a549 2012-03-19T10:38:02.803 2012-03-19T12:25:03.880 2014-08-27T04:11:24.850 101 GSM897083 SRR446332.bw CSHL_RnaSeq_A549_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 087WC,088WC,087WC,088WC", "labexpid: LID47039,LID47039,LID47040,LID47040", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 021WC", "labexpid: LID20749", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1") SRP003754 SRS301475 SRX130235 SRR446333 30069845 30069845 1 FALSE FALSE 26477628 721548847 liver hepg2 2012-03-19T10:38:02.840 2015-08-27T01:23:55.497 2015-08-27T01:30:44.390 36 GSM897084 SRR446333.bw CSHL_RnaSeq_HepG2_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "cell description: hepatocellular carcinoma", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 014WC,013WC,013WC,014WC", "labexpid: LID44460,LID44461,LID44460,LID44461", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1,2", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 013WC", "labexpid: LID44460", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1") SRP003754 SRS301475 SRX130235 SRR446334 30626773 30626773 1 FALSE FALSE 23980015 628949956 liver hepg2 2012-03-19T10:38:02.840 2015-08-27T01:23:55.497 2015-08-27T01:30:44.390 36 GSM897084 SRR446334.bw CSHL_RnaSeq_HepG2_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "cell description: hepatocellular carcinoma", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 014WC,013WC,013WC,014WC", "labexpid: LID44460,LID44461,LID44460,LID44461", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1,2", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 013WC", "labexpid: LID44460", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1") SRP003754 SRS301476 SRX130236 SRR446335 36884347 36884347 1 FALSE FALSE 35793188 1110827786 liver hepg2 2012-03-19T10:38:02.877 2012-03-19T12:25:03.880 2014-08-27T04:11:25.450 36 GSM897085 SRR446335.bw CSHL_RnaSeq_HepG2_nucleus_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "cell description: hepatocellular carcinoma", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 013N,013N,014N,014N", "labexpid: LID44463,LID44462,LID44462,LID44463", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1,2", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 013N", "labexpid: LID44462", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1") SRP003754 SRS301476 SRX130236 SRR446336 31491181 31491181 1 FALSE FALSE 30542570 947657693 liver hepg2 2012-03-19T10:38:02.877 2012-03-19T12:25:03.880 2014-08-27T04:11:25.450 36 GSM897085 SRR446336.bw CSHL_RnaSeq_HepG2_nucleus_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "cell description: hepatocellular carcinoma", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 013N,013N,014N,014N", "labexpid: LID44463,LID44462,LID44462,LID44463", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1,2", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 013N", "labexpid: LID44462", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1") SRP003754 SRS301477 SRX130237 SRR446337 29241953 29241953 1 FALSE FALSE 26966319 778444153 skin esc 2012-03-19T10:38:02.913 2012-03-19T12:25:03.880 2014-08-27T04:11:25.770 36 GSM897086 SRR446337.bw CSHL_RnaSeq_NHEK_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 007WC,008WC,007WC,008WC", "labexpid: LID21000,LID20999,LID21000,LID20999", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 007WC", "labexpid: LID20999", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1") SRP003754 SRS301477 SRX130237 SRR446338 23688899 23688899 1 FALSE FALSE 21633158 608680650 skin esc 2012-03-19T10:38:02.913 2012-03-19T12:25:03.880 2014-08-27T04:11:25.770 36 GSM897086 SRR446338.bw CSHL_RnaSeq_NHEK_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 007WC,008WC,007WC,008WC", "labexpid: LID21000,LID20999,LID21000,LID20999", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 007WC", "labexpid: LID20999", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1") SRP003754 SRS301482 SRX130247 SRR446388 23870568 23870568 1 FALSE FALSE 20219220 571649499 blood k562 2012-03-19T15:17:02.100 2012-03-19T15:47:47.770 2014-08-27T01:47:21.347 36 GSM605629 SRR446388.bw CSHL_RnaSeq_K562_cytosol_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: gen0142C,001C,002C,001C,002C", "labexpid: LID10571,crg-36,LID10572,LID10572,LID10571", "labversion: Produced by Hannon Lab,iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1,2", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 001C", "labexpid: LID10572", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1") SRP003754 SRS301482 SRX130247 SRR446389 21898484 21898484 1 FALSE FALSE 19257882 552017507 blood k562 2012-03-19T15:17:02.100 2012-03-19T15:47:47.770 2014-08-27T01:47:21.347 36 GSM605629 SRR446389.bw CSHL_RnaSeq_K562_cytosol_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: gen0142C,001C,002C,001C,002C", "labexpid: LID10571,crg-36,LID10572,LID10572,LID10571", "labversion: Produced by Hannon Lab,iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1,2", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 001C", "labexpid: LID10572", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1") SRP003754 SRS301483 SRX130248 SRR446390 32219427 32219427 1 FALSE FALSE 31083950 1048080820 blood k562 2012-03-19T15:17:02.223 2012-03-19T15:47:47.770 2014-08-27T04:42:40.517 36 GSM605635 SRR446390.bw CSHL_RnaSeq_K562_nucleus_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 001N,002N,gen0151N,001N,002N", "labexpid: LID10570,LID10569,LID10570,LID10569,crg-42", "labversion: Produced by Hannon Lab,iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1,2", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 001N", "labexpid: LID10570", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1") SRP003754 SRS301483 SRX130248 SRR446391 27867587 27867587 1 FALSE FALSE 26849584 896105929 blood k562 2012-03-19T15:17:02.223 2012-03-19T15:47:47.770 2014-08-27T04:42:40.517 36 GSM605635 SRR446391.bw CSHL_RnaSeq_K562_nucleus_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 001N,002N,gen0151N,001N,002N", "labexpid: LID10570,LID10569,LID10570,LID10569,crg-42", "labversion: Produced by Hannon Lab,iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1,2", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 001N", "labexpid: LID10570", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1") SRP003754 SRS351978 SRX171070 SRR527584 52628947 52628947 1 FALSE FALSE 44222502 3501199903 epithelium a549 2012-07-26T17:05:02.953 2012-07-26T18:05:10.423 2014-08-27T03:35:14.170 101 GSM973661 SRR527584.bw CSHL_RnaSeq_A549_nucleus_CIP-TAP_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 087N,088N,088N,087N", "labexpid: LID46100,LID46101,LID46100,LID46101", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "protocol: CIP-TAP", "protocol description: This kind of library was made from RNA < 200 nucleotides that was pre-treated sequentially with Calf Intestinal Alkaline Phosphatase followed by Tobacco Acid Pyrophosphatase. Hence, it will be enriched for capped RNAs.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 087N,088N", "labexpid: LID46100,LID46101", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads" ) SRP003754 SRS351978 SRX171070 SRR527585 45201465 45201465 1 FALSE FALSE 27571601 1227688889 epithelium a549 2012-07-26T17:05:02.953 2012-07-26T18:05:10.423 2014-08-27T03:35:14.170 101 GSM973661 SRR527585.bw CSHL_RnaSeq_A549_nucleus_CIP-TAP_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 087N,088N,088N,087N", "labexpid: LID46100,LID46101,LID46100,LID46101", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "protocol: CIP-TAP", "protocol description: This kind of library was made from RNA < 200 nucleotides that was pre-treated sequentially with Calf Intestinal Alkaline Phosphatase followed by Tobacco Acid Pyrophosphatase. Hence, it will be enriched for capped RNAs.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 087N,088N", "labexpid: LID46100,LID46101", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads" ) SRP003754 SRS351979 SRX171071 SRR527586 102732191 102732191 1 FALSE FALSE 88798981 6630501851 blood cd34 2012-07-26T17:05:03.770 2012-07-26T18:05:10.760 2014-08-27T03:14:27.967 101 GSM973662 SRR527586.bw CSHL_RnaSeq_CD34+_Mobilized_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 043WC", "labexpid: LID46197", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 043WC", "labexpid: LID46197", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS351980 SRX171072 SRR527587 72643253 72643253 1 FALSE FALSE 60363494 4904533184 brain sk 2012-07-26T17:05:04.003 2012-07-26T18:05:11.037 2014-08-27T03:14:28.680 101 GSM973663 SRR527587.bw CSHL_RnaSeq_SK-N-SH_nucleus_CIP-TAP_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 086N,085N,085N,086N", "labexpid: LID46272,LID46273,LID46272,LID46273", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "protocol: CIP-TAP", "protocol description: This kind of library was made from RNA < 200 nucleotides that was pre-treated sequentially with Calf Intestinal Alkaline Phosphatase followed by Tobacco Acid Pyrophosphatase. Hence, it will be enriched for capped RNAs.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 085N,086N", "labexpid: LID46272,LID46273", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads" ) SRP003754 SRS351980 SRX171072 SRR527588 98381091 98381091 1 FALSE FALSE 88774510 7615252629 brain sk 2012-07-26T17:05:04.003 2012-07-26T18:05:11.037 2014-08-27T03:14:28.680 101 GSM973663 SRR527588.bw CSHL_RnaSeq_SK-N-SH_nucleus_CIP-TAP_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 086N,085N,085N,086N", "labexpid: LID46272,LID46273,LID46272,LID46273", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "protocol: CIP-TAP", "protocol description: This kind of library was made from RNA < 200 nucleotides that was pre-treated sequentially with Calf Intestinal Alkaline Phosphatase followed by Tobacco Acid Pyrophosphatase. Hence, it will be enriched for capped RNAs.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 085N,086N", "labexpid: LID46272,LID46273", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads" ) SRP003754 SRS351981 SRX171073 SRR527589 87294193 87294193 1 FALSE FALSE 66068744 3417179100 epithelium a549 2012-07-26T17:05:04.217 2012-07-26T18:05:11.137 2014-08-27T03:14:29.380 101 GSM973664 SRR527589.bw CSHL_RnaSeq_A549_cytosol_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 087C,087C,088C,088C", "labexpid: LID46063,LID46062,LID46063,LID46062", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "protocol: None", "protocol description: No special treatment or protocol applies", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 087C,088C", "labexpid: LID46062,LID46063", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS351981 SRX171073 SRR527590 92844481 92844481 1 FALSE FALSE 70213196 3672589533 epithelium a549 2012-07-26T17:05:04.217 2012-07-26T18:05:11.137 2014-08-27T03:14:29.380 101 GSM973664 SRR527590.bw CSHL_RnaSeq_A549_cytosol_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 087C,087C,088C,088C", "labexpid: LID46063,LID46062,LID46063,LID46062", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "protocol: None", "protocol description: No special treatment or protocol applies", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 087C,088C", "labexpid: LID46062,LID46063", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS351982 SRX171074 SRR527591 67392552 67392552 1 FALSE FALSE 63624641 4325076229 brain sk 2012-07-26T17:05:04.437 2012-07-26T18:05:11.230 2014-08-27T03:19:24.513 101 GSM973665 SRR527591.bw CSHL_RnaSeq_SK-N-SH_nucleus_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 086N,085N,085N,086N", "labexpid: LID46203,LID46204,LID46203,LID46204", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "protocol: None", "protocol description: No special treatment or protocol applies", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 085N,086N", "labexpid: LID46203,LID46204", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS351982 SRX171074 SRR527592 82110096 82110096 1 FALSE FALSE 77537298 5321330034 brain sk 2012-07-26T17:05:04.437 2012-07-26T18:05:11.230 2014-08-27T03:19:24.513 101 GSM973665 SRR527592.bw CSHL_RnaSeq_SK-N-SH_nucleus_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 086N,085N,085N,086N", "labexpid: LID46203,LID46204,LID46203,LID46204", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "protocol: None", "protocol description: No special treatment or protocol applies", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 085N,086N", "labexpid: LID46203,LID46204", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS351983 SRX171075 SRR527593 87320551 87320551 1 FALSE FALSE 67504239 3563879162 brain sk 2012-07-26T17:05:04.553 2012-07-26T18:05:11.330 2014-08-27T03:19:25.067 101 GSM973666 SRR527593.bw CSHL_RnaSeq_SK-N-SH_cytosol_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 085C,086C,085C,086C", "labexpid: LID46205,LID46205,LID46206,LID46206", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "protocol: None", "protocol description: No special treatment or protocol applies", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 085C,086C", "labexpid: LID46205,LID46206", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS351983 SRX171075 SRR527594 82402468 82402468 1 FALSE FALSE 66176323 3717777286 brain sk 2012-07-26T17:05:04.553 2012-07-26T18:05:11.330 2014-08-27T03:19:25.067 101 GSM973666 SRR527594.bw CSHL_RnaSeq_SK-N-SH_cytosol_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 085C,086C,085C,086C", "labexpid: LID46205,LID46205,LID46206,LID46206", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "protocol: None", "protocol description: No special treatment or protocol applies", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 085C,086C", "labexpid: LID46205,LID46206", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS351984 SRX171076 SRR527595 140682787 140682787 1 FALSE FALSE 116642413 6316028452 brain sk 2012-07-26T17:05:04.660 2012-07-26T18:05:11.437 2014-08-27T03:19:25.607 101 GSM973667 SRR527595.bw CSHL_RnaSeq_SK-N-SH_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 086WC,085WC,086WC,085WC", "labexpid: LID46956,LID46957,LID46957,LID46956", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 085WC", "labexpid: LID46956", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3") SRP003754 SRS351984 SRX171076 SRR527596 142951400 142951400 1 FALSE FALSE 114254455 5573618187 brain sh 2012-07-26T17:05:04.660 2012-07-26T18:05:11.437 2014-08-27T03:19:25.607 101 GSM973667 SRR527596.bw CSHL_RnaSeq_SK-N-SH_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 086WC,085WC,086WC,085WC", "labexpid: LID46956,LID46957,LID46957,LID46956", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 085WC", "labexpid: LID46956", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3") SRP003754 SRS351985 SRX171077 SRR527597 95733485 95733485 1 FALSE FALSE 78664587 4540063086 epithelium a549 2012-07-26T17:05:04.817 2012-07-26T18:05:11.557 2014-08-27T03:19:26.023 101 GSM973668 SRR527597.bw CSHL_RnaSeq_A549_cell_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 087WC,088WC,087WC,088WC", "labexpid: LID46058,LID46058,LID46059,LID46059", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: cell", "localization description: Whole cell", "protocol: None", "protocol description: No special treatment or protocol applies", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 087WC,088WC", "labexpid: LID46058,LID46059", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS351985 SRX171077 SRR527598 89015475 89015475 1 FALSE FALSE 68527466 3599803424 epithelium a549 2012-07-26T17:05:04.817 2012-07-26T18:05:11.557 2014-08-27T03:19:26.023 101 GSM973668 SRR527598.bw CSHL_RnaSeq_A549_cell_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 087WC,088WC,087WC,088WC", "labexpid: LID46058,LID46058,LID46059,LID46059", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: cell", "localization description: Whole cell", "protocol: None", "protocol description: No special treatment or protocol applies", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 087WC,088WC", "labexpid: LID46058,LID46059", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS351986 SRX171078 SRR527599 79446333 79446333 1 FALSE FALSE 49779196 2197781330 epithelium a549 2012-07-26T17:05:04.903 2012-07-26T18:05:11.673 2014-08-27T03:19:26.303 101 GSM973669 SRR527599.bw CSHL_RnaSeq_A549_cytosol_CIP-TAP_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 087C,087C,088C,088C", "labexpid: LID46102,LID46103,LID46102,LID46103", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "protocol: CIP-TAP", "protocol description: This kind of library was made from RNA < 200 nucleotides that was pre-treated sequentially with Calf Intestinal Alkaline Phosphatase followed by Tobacco Acid Pyrophosphatase. Hence, it will be enriched for capped RNAs.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 087C,088C", "labexpid: LID46102,LID46103", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads" ) SRP003754 SRS351986 SRX171078 SRR527600 98722012 98722012 1 FALSE FALSE 87824583 7222052559 epithelium a549 2012-07-26T17:05:04.903 2012-07-26T18:05:11.673 2014-08-27T03:19:26.303 101 GSM973669 SRR527600.bw CSHL_RnaSeq_A549_cytosol_CIP-TAP_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 087C,087C,088C,088C", "labexpid: LID46102,LID46103,LID46102,LID46103", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "protocol: CIP-TAP", "protocol description: This kind of library was made from RNA < 200 nucleotides that was pre-treated sequentially with Calf Intestinal Alkaline Phosphatase followed by Tobacco Acid Pyrophosphatase. Hence, it will be enriched for capped RNAs.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 087C,088C", "labexpid: LID46102,LID46103", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads" ) SRP003754 SRS351987 SRX171079 SRR527601 81018917 81018917 1 FALSE FALSE 54145514 2115359713 lung imr90 2012-07-26T17:05:05.010 2012-07-26T18:05:11.783 2014-08-27T03:19:26.560 101 GSM973670 SRR527601.bw CSHL_RnaSeq_IMR90_cytosol_CIP-TAP_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045C,046C,046C,045C", "labexpid: LID45888,LID45889,LID45888,LID45889", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "protocol: CIP-TAP", "protocol description: This kind of library was made from RNA < 200 nucleotides that was pre-treated sequentially with Calf Intestinal Alkaline Phosphatase followed by Tobacco Acid Pyrophosphatase. Hence, it will be enriched for capped RNAs.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045C,046C", "labexpid: LID45888,LID45889", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads" ) SRP003754 SRS351987 SRX171079 SRR527602 87042203 87042203 1 FALSE FALSE 60789450 2544736910 lung imr90 2012-07-26T17:05:05.010 2012-07-26T18:05:11.783 2014-08-27T03:19:26.560 101 GSM973670 SRR527602.bw CSHL_RnaSeq_IMR90_cytosol_CIP-TAP_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045C,046C,046C,045C", "labexpid: LID45888,LID45889,LID45888,LID45889", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "protocol: CIP-TAP", "protocol description: This kind of library was made from RNA < 200 nucleotides that was pre-treated sequentially with Calf Intestinal Alkaline Phosphatase followed by Tobacco Acid Pyrophosphatase. Hence, it will be enriched for capped RNAs.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045C,046C", "labexpid: LID45888,LID45889", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads" ) SRP003754 SRS351988 SRX171080 SRR527603 92870259 92870259 1 FALSE FALSE 29646389 1178851503 lung imr90 2012-07-26T17:05:05.197 2012-07-26T18:05:11.963 2014-08-27T03:19:26.953 101 GSM973671 SRR527603.bw CSHL_RnaSeq_IMR90_cytosol_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045C,046C,046C,045C", "labexpid: LID45957,LID45958,LID45958,LID45957", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "protocol: None", "protocol description: No special treatment or protocol applies", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045C,046C", "labexpid: LID45957,LID45958", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS351988 SRX171080 SRR527604 89457830 89457830 1 FALSE FALSE 51007279 2551218646 lung imr90 2012-07-26T17:05:05.197 2012-07-26T18:05:11.963 2014-08-27T03:19:26.953 101 GSM973671 SRR527604.bw CSHL_RnaSeq_IMR90_cytosol_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045C,046C,046C,045C", "labexpid: LID45957,LID45958,LID45958,LID45957", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "protocol: None", "protocol description: No special treatment or protocol applies", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045C,046C", "labexpid: LID45957,LID45958", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS351989 SRX171081 SRR527605 98052207 98052207 1 FALSE FALSE 71119110 3141745374 breast mcf 2012-07-26T17:05:05.297 2012-07-26T18:05:12.060 2014-08-27T03:19:27.433 101 GSM973672 SRR527605.bw CSHL_RnaSeq_MCF-7_cytosol_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 089C,090C,089C,090C", "labexpid: LID46315,LID46315,LID46316,LID46316", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "protocol: None", "protocol description: No special treatment or protocol applies", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 089C,090C", "labexpid: LID46315,LID46316", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS351989 SRX171081 SRR527606 113672050 113672050 1 FALSE FALSE 84435729 3860551579 breast mcf 2012-07-26T17:05:05.297 2012-07-26T18:05:12.060 2014-08-27T03:19:27.433 101 GSM973672 SRR527606.bw CSHL_RnaSeq_MCF-7_cytosol_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 089C,090C,089C,090C", "labexpid: LID46315,LID46315,LID46316,LID46316", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "protocol: None", "protocol description: No special treatment or protocol applies", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 089C,090C", "labexpid: LID46315,LID46316", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS351990 SRX171082 SRR527607 106888679 106888679 1 FALSE FALSE 31958073 1260489221 lung imr90 2012-07-26T17:05:05.477 2012-07-26T18:05:12.223 2014-08-27T03:19:27.763 101 GSM973673 SRR527607.bw CSHL_RnaSeq_IMR90_nucleus_CIP-TAP_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045N,046N,045N,046N", "labexpid: LID45886,LID45887,LID45886,LID45887", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "protocol: CIP-TAP", "protocol description: This kind of library was made from RNA < 200 nucleotides that was pre-treated sequentially with Calf Intestinal Alkaline Phosphatase followed by Tobacco Acid Pyrophosphatase. Hence, it will be enriched for capped RNAs.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045N,046N", "labexpid: LID45886,LID45887", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads" ) SRP003754 SRS351990 SRX171082 SRR527608 102626590 102626590 1 FALSE FALSE 53056226 2613584925 lung imr90 2012-07-26T17:05:05.477 2012-07-26T18:05:12.223 2014-08-27T03:19:27.763 101 GSM973673 SRR527608.bw CSHL_RnaSeq_IMR90_nucleus_CIP-TAP_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045N,046N,045N,046N", "labexpid: LID45886,LID45887,LID45886,LID45887", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "protocol: CIP-TAP", "protocol description: This kind of library was made from RNA < 200 nucleotides that was pre-treated sequentially with Calf Intestinal Alkaline Phosphatase followed by Tobacco Acid Pyrophosphatase. Hence, it will be enriched for capped RNAs.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045N,046N", "labexpid: LID45886,LID45887", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads" ) SRP003754 SRS351991 SRX171083 SRR527609 95874438 95874438 1 FALSE FALSE 56748288 2546231712 epithelium a549 2012-07-26T17:05:05.563 2012-07-26T18:05:12.320 2014-08-27T03:19:28.243 101 GSM973674 SRR527609.bw CSHL_RnaSeq_A549_cell_CIP-TAP_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 087WC,088WC,087WC,088WC", "labexpid: LID46098,LID46099,LID46098,LID46099", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: cell", "localization description: Whole cell", "protocol: CIP-TAP", "protocol description: This kind of library was made from RNA < 200 nucleotides that was pre-treated sequentially with Calf Intestinal Alkaline Phosphatase followed by Tobacco Acid Pyrophosphatase. Hence, it will be enriched for capped RNAs.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 087WC,088WC", "labexpid: LID46098,LID46099", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS351991 SRX171083 SRR527610 82339610 82339610 1 FALSE FALSE 50604004 2057880131 epithelium a549 2012-07-26T17:05:05.563 2012-07-26T18:05:12.320 2014-08-27T03:19:28.243 101 GSM973674 SRR527610.bw CSHL_RnaSeq_A549_cell_CIP-TAP_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 087WC,088WC,087WC,088WC", "labexpid: LID46098,LID46099,LID46098,LID46099", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: cell", "localization description: Whole cell", "protocol: CIP-TAP", "protocol description: This kind of library was made from RNA < 200 nucleotides that was pre-treated sequentially with Calf Intestinal Alkaline Phosphatase followed by Tobacco Acid Pyrophosphatase. Hence, it will be enriched for capped RNAs.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 087WC,088WC", "labexpid: LID46098,LID46099", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS351992 SRX171084 SRR527611 72313186 72313186 1 FALSE FALSE 58338199 3223903089 brain sk 2012-07-26T17:05:05.670 2012-07-26T18:05:12.417 2014-08-27T03:19:28.750 101 GSM973675 SRR527611.bw CSHL_RnaSeq_SK-N-SH_cell_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 086WC,085WC,086WC,085WC", "labexpid: LID46201,LID46202,LID46201,LID46202", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: cell", "localization description: Whole cell", "protocol: None", "protocol description: No special treatment or protocol applies", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 085WC,086WC", "labexpid: LID46201,LID46202", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS351992 SRX171084 SRR527612 60657473 60657473 1 FALSE FALSE 45683120 2294746495 brain sk 2012-07-26T17:05:05.670 2012-07-26T18:05:12.417 2014-08-27T03:19:28.750 101 GSM973675 SRR527612.bw CSHL_RnaSeq_SK-N-SH_cell_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 086WC,085WC,086WC,085WC", "labexpid: LID46201,LID46202,LID46201,LID46202", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: cell", "localization description: Whole cell", "protocol: None", "protocol description: No special treatment or protocol applies", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 085WC,086WC", "labexpid: LID46201,LID46202", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS351993 SRX171085 SRR527613 93591539 93591539 1 FALSE FALSE 53459229 2563831497 breast mcf 2012-07-26T17:05:05.753 2012-07-26T18:05:12.507 2014-08-27T03:19:29.127 101 GSM973676 SRR527613.bw CSHL_RnaSeq_MCF-7_cell_CIP-TAP_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 089WC,090WC,089WC,090WC", "labexpid: LID46458,LID46459,LID46458,LID46459", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: cell", "localization description: Whole cell", "protocol: CIP-TAP", "protocol description: This kind of library was made from RNA < 200 nucleotides that was pre-treated sequentially with Calf Intestinal Alkaline Phosphatase followed by Tobacco Acid Pyrophosphatase. Hence, it will be enriched for capped RNAs.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 089WC,090WC", "labexpid: LID46458,LID46459", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS351993 SRX171085 SRR527614 78007771 78007771 1 FALSE FALSE 52256093 2781223282 breast mcf 2012-07-26T17:05:05.753 2012-07-26T18:05:12.507 2014-08-27T03:19:29.127 101 GSM973676 SRR527614.bw CSHL_RnaSeq_MCF-7_cell_CIP-TAP_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 089WC,090WC,089WC,090WC", "labexpid: LID46458,LID46459,LID46458,LID46459", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: cell", "localization description: Whole cell", "protocol: CIP-TAP", "protocol description: This kind of library was made from RNA < 200 nucleotides that was pre-treated sequentially with Calf Intestinal Alkaline Phosphatase followed by Tobacco Acid Pyrophosphatase. Hence, it will be enriched for capped RNAs.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 089WC,090WC", "labexpid: LID46458,LID46459", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS351994 SRX171086 SRR527615 95384062 95384062 1 FALSE FALSE 38072974 1545594020 brain sh 2012-07-26T17:05:05.870 2012-07-26T18:05:12.607 2014-08-27T03:23:25.087 101 GSM973677 SRR527615.bw CSHL_RnaSeq_SK-N-SH_cell_CIP-TAP_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 086WC,085WC,086WC,085WC", "labexpid: LID46270,LID46270,LID46271,LID46271", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: cell", "localization description: Whole cell", "protocol: CIP-TAP", "protocol description: This kind of library was made from RNA < 200 nucleotides that was pre-treated sequentially with Calf Intestinal Alkaline Phosphatase followed by Tobacco Acid Pyrophosphatase. Hence, it will be enriched for capped RNAs.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 085WC,086WC", "labexpid: LID46270,LID46271", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS351994 SRX171086 SRR527616 76996121 76996121 1 FALSE FALSE 34479670 1536089149 brain sk 2012-07-26T17:05:05.870 2012-07-26T18:05:12.607 2014-08-27T03:23:25.087 101 GSM973677 SRR527616.bw CSHL_RnaSeq_SK-N-SH_cell_CIP-TAP_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 086WC,085WC,086WC,085WC", "labexpid: LID46270,LID46270,LID46271,LID46271", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: cell", "localization description: Whole cell", "protocol: CIP-TAP", "protocol description: This kind of library was made from RNA < 200 nucleotides that was pre-treated sequentially with Calf Intestinal Alkaline Phosphatase followed by Tobacco Acid Pyrophosphatase. Hence, it will be enriched for capped RNAs.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 085WC,086WC", "labexpid: LID46270,LID46271", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS351995 SRX171087 SRR527617 116865804 116865804 1 FALSE FALSE 37905621 1507111569 lung imr90 2012-07-26T17:05:05.967 2012-07-26T18:05:12.703 2014-08-27T03:23:25.370 101 GSM973678 SRR527617.bw CSHL_RnaSeq_IMR90_nucleus_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045N,046N,045N,046N", "labexpid: LID45955,LID45956,LID45955,LID45956", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "protocol: None", "protocol description: No special treatment or protocol applies", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045N,046N", "labexpid: LID45955,LID45956", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS351995 SRX171087 SRR527618 97440558 97440558 1 FALSE FALSE 53326144 2616456714 lung imr90 2012-07-26T17:05:05.967 2012-07-26T18:05:12.703 2014-08-27T03:23:25.370 101 GSM973678 SRR527618.bw CSHL_RnaSeq_IMR90_nucleus_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045N,046N,045N,046N", "labexpid: LID45955,LID45956,LID45955,LID45956", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "protocol: None", "protocol description: No special treatment or protocol applies", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045N,046N", "labexpid: LID45955,LID45956", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS351996 SRX171088 SRR527619 131637077 131637077 1 FALSE FALSE 128882534 10750844731 lung imr90 2012-07-26T17:05:06.053 2012-07-26T18:05:12.797 2014-08-27T03:30:19.677 101 GSM973679 SRR527619.bw CSHL_RnaSeq_IMR90_nucleus_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045N,046N,045N,046N", "labexpid: LID47266,LID47267,LID47266,LID47267", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045N", "labexpid: LID47266", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1") SRP003754 SRS351996 SRX171088 SRR527620 137416233 137416233 1 FALSE FALSE 134464260 10752450548 lung imr90 2012-07-26T17:05:06.053 2012-07-26T18:05:12.797 2014-08-27T03:30:19.677 101 GSM973679 SRR527620.bw CSHL_RnaSeq_IMR90_nucleus_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045N,046N,045N,046N", "labexpid: LID47266,LID47267,LID47266,LID47267", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045N", "labexpid: LID47266", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1") SRP003754 SRS351997 SRX171089 SRR527621 109223531 109223531 1 FALSE FALSE 78214243 3785015448 lung imr90 2012-07-26T17:05:06.177 2012-07-26T18:05:12.900 2014-08-27T03:30:19.923 101 GSM973680 SRR527621.bw CSHL_RnaSeq_IMR90_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045WC,045WC,046WC,046WC", "labexpid: LID47262,LID47263,LID47262,LID47263", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045WC", "labexpid: LID47262", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1") SRP003754 SRS351997 SRX171089 SRR527622 91539452 91539452 1 FALSE FALSE 70532046 3827974528 lung imr90 2012-07-26T17:05:06.177 2012-07-26T18:05:12.900 2014-08-27T03:30:19.923 101 GSM973680 SRR527622.bw CSHL_RnaSeq_IMR90_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045WC,045WC,046WC,046WC", "labexpid: LID47262,LID47263,LID47262,LID47263", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045WC", "labexpid: LID47262", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1") SRP003754 SRS351998 SRX171090 SRR527623 106512317 106512317 1 FALSE FALSE 72773551 3152532584 breast mcf 2012-07-26T17:05:06.293 2012-07-26T18:05:13.000 2014-08-27T03:30:20.190 101 GSM973681 SRR527623.bw CSHL_RnaSeq_MCF-7_cytosol_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 089C,090C,089C,090C", "labexpid: LID47163,LID47162,LID47162,LID47163", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 089C", "labexpid: LID47162", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3") SRP003754 SRS351998 SRX171090 SRR527624 110746401 110746401 1 FALSE FALSE 84519071 4090181450 breast mcf 2012-07-26T17:05:06.293 2012-07-26T18:05:13.000 2014-08-27T03:30:20.190 101 GSM973681 SRR527624.bw CSHL_RnaSeq_MCF-7_cytosol_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 089C,090C,089C,090C", "labexpid: LID47163,LID47162,LID47162,LID47163", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 089C", "labexpid: LID47162", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3") SRP003754 SRS351999 SRX171091 SRR527625 116842384 116842384 1 FALSE FALSE 110898829 8836225535 breast mcf 2012-07-26T17:05:06.407 2012-07-26T18:05:13.110 2014-08-27T03:30:20.460 101 GSM973682 SRR527625.bw CSHL_RnaSeq_MCF-7_nucleus_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 089N,090N,089N,090N", "labexpid: LID47165,LID47164,LID47164,LID47165", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 089N", "labexpid: LID47164", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3") SRP003754 SRS351999 SRX171091 SRR527626 109186776 109186776 1 FALSE FALSE 104006897 8135358433 breast mcf 2012-07-26T17:05:06.407 2012-07-26T18:05:13.110 2014-08-27T03:30:20.460 101 GSM973682 SRR527626.bw CSHL_RnaSeq_MCF-7_nucleus_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 089N,090N,089N,090N", "labexpid: LID47165,LID47164,LID47164,LID47165", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 089N", "labexpid: LID47164", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3") SRP003754 SRS352000 SRX171092 SRR527627 101227590 101227590 1 FALSE FALSE 97415660 6981286465 epithelium a549 2012-07-26T17:05:06.493 2012-07-26T18:05:13.203 2014-08-27T02:58:35.440 101 GSM973683 SRR527627.bw CSHL_RnaSeq_A549_nucleus_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 087N,088N,088N,087N", "labexpid: LID46061,LID46060,LID46060,LID46061", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "protocol: None", "protocol description: No special treatment or protocol applies", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 087N,088N", "labexpid: LID46060,LID46061", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS352000 SRX171092 SRR527628 86456756 86456756 1 FALSE FALSE 83115539 5977921794 epithelium a549 2012-07-26T17:05:06.493 2012-07-26T18:05:13.203 2014-08-27T02:58:35.440 101 GSM973683 SRR527628.bw CSHL_RnaSeq_A549_nucleus_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 087N,088N,088N,087N", "labexpid: LID46061,LID46060,LID46060,LID46061", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "protocol: None", "protocol description: No special treatment or protocol applies", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 087N,088N", "labexpid: LID46060,LID46061", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS352001 SRX171093 SRR527629 107110051 107110051 1 FALSE FALSE 78453870 3806822550 epithelium a549 2012-07-26T17:05:06.583 2012-07-26T18:05:13.297 2014-08-27T02:58:35.967 101 GSM973684 SRR527629.bw CSHL_RnaSeq_A549_cytosol_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 087C,087C,088C,088C", "labexpid: LID47041,LID47042,LID47041,LID47042", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 087C", "labexpid: LID47041", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3") SRP003754 SRS352001 SRX171093 SRR527630 102911649 102911649 1 FALSE FALSE 73519669 3485696708 epithelium a549 2012-07-26T17:05:06.583 2012-07-26T18:05:13.297 2014-08-27T02:58:35.967 101 GSM973684 SRR527630.bw CSHL_RnaSeq_A549_cytosol_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 087C,087C,088C,088C", "labexpid: LID47041,LID47042,LID47041,LID47042", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 087C", "labexpid: LID47041", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3") SRP003754 SRS352002 SRX171094 SRR527631 123790634 123790634 1 FALSE FALSE 117354738 9423397322 epithelium a549 2012-07-26T17:05:06.687 2012-07-26T18:05:13.393 2014-08-27T02:58:36.590 101 GSM973685 SRR527631.bw CSHL_RnaSeq_A549_nucleus_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 088N,087N,088N,087N", "labexpid: LID47044,LID47043,LID47044,LID47043", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 087N", "labexpid: LID47043", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3") SRP003754 SRS352002 SRX171094 SRR527632 94056381 94056381 1 FALSE FALSE 88459870 6899262399 epithelium a549 2012-07-26T17:05:06.687 2012-07-26T18:05:13.393 2014-08-27T02:58:36.590 101 GSM973685 SRR527632.bw CSHL_RnaSeq_A549_nucleus_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 088N,087N,088N,087N", "labexpid: LID47044,LID47043,LID47044,LID47043", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 087N", "labexpid: LID47043", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3") SRP003754 SRS352003 SRX171095 SRR527633 97864212 97864212 1 FALSE FALSE 75509474 4059780791 lung imr90 2012-07-26T17:05:06.777 2012-07-26T18:05:13.500 2014-08-27T02:58:37.213 101 GSM973686 SRR527633.bw CSHL_RnaSeq_IMR90_cytosol_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045C,046C,046C,045C", "labexpid: LID47264,LID47265,LID47264,LID47265", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045C", "labexpid: LID47264", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1") SRP003754 SRS352003 SRX171095 SRR527634 130934022 130934022 1 FALSE FALSE 104551180 5049795323 lung imr90 2012-07-26T17:05:06.777 2012-07-26T18:05:13.500 2014-08-27T02:58:37.213 101 GSM973686 SRR527634.bw CSHL_RnaSeq_IMR90_cytosol_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045C,046C,046C,045C", "labexpid: LID47264,LID47265,LID47264,LID47265", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045C", "labexpid: LID47264", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1") SRP003754 SRS352004 SRX171096 SRR527635 68985897 68985897 1 FALSE FALSE 64891000 4404733512 breast mcf 2012-07-26T17:05:06.887 2012-07-26T18:05:13.600 2014-08-27T03:03:18.093 101 GSM973687 SRR527635.bw CSHL_RnaSeq_MCF-7_nucleus_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 089N,090N,089N,090N", "labexpid: LID46313,LID46313,LID46314,LID46314", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "protocol: None", "protocol description: No special treatment or protocol applies", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 089N,090N", "labexpid: LID46313,LID46314", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS352004 SRX171096 SRR527636 98952006 98952006 1 FALSE FALSE 94382679 6496847970 breast mcf 2012-07-26T17:05:06.887 2012-07-26T18:05:13.600 2014-08-27T03:03:18.093 101 GSM973687 SRR527636.bw CSHL_RnaSeq_MCF-7_nucleus_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 089N,090N,089N,090N", "labexpid: LID46313,LID46313,LID46314,LID46314", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "protocol: None", "protocol description: No special treatment or protocol applies", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 089N,090N", "labexpid: LID46313,LID46314", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS352005 SRX171097 SRR527637 124364751 124364751 1 FALSE FALSE 94261038 4673309927 brain sk 2012-07-26T17:05:06.987 2012-07-26T18:05:13.687 2014-08-27T03:03:18.667 101 GSM973688 SRR527637.bw CSHL_RnaSeq_SK-N-SH_cytosol_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 085C,085C,086C,086C", "labexpid: LID46959,LID46958,LID46958,LID46959", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 085C", "labexpid: LID46958", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3") SRP003754 SRS352005 SRX171097 SRR527638 126254188 126254188 1 FALSE FALSE 98890746 5155986308 brain sk 2012-07-26T17:05:06.987 2012-07-26T18:05:13.687 2014-08-27T03:03:18.667 101 GSM973688 SRR527638.bw CSHL_RnaSeq_SK-N-SH_cytosol_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 085C,085C,086C,086C", "labexpid: LID46959,LID46958,LID46958,LID46959", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 085C", "labexpid: LID46958", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3") SRP003754 SRS352006 SRX171098 SRR527639 145554313 145554313 1 FALSE FALSE 141463204 11284311412 brain sk 2012-07-26T17:05:07.090 2012-07-26T18:05:13.770 2014-08-27T03:03:19.547 101 GSM973689 SRR527639.bw CSHL_RnaSeq_SK-N-SH_nucleus_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 086N,085N,085N,086N", "labexpid: LID46960,LID46961,LID46960,LID46961", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 085N", "labexpid: LID46960", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3") SRP003754 SRS352006 SRX171098 SRR527640 61358022 61358022 1 FALSE FALSE 59986462 5233239064 brain sk 2012-07-26T17:05:07.090 2012-07-26T18:05:13.770 2014-08-27T03:03:19.547 101 GSM973689 SRR527640.bw CSHL_RnaSeq_SK-N-SH_nucleus_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 086N,085N,085N,086N", "labexpid: LID46960,LID46961,LID46960,LID46961", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 085N", "labexpid: LID46960", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3") SRP003754 SRS352007 SRX171099 SRR527641 101709837 101709837 1 FALSE FALSE 78049962 3709848365 breast mcf 2012-07-26T17:05:07.183 2012-07-26T18:05:13.867 2014-08-27T03:03:20.143 101 GSM973690 SRR527641.bw CSHL_RnaSeq_MCF-7_cell_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 089WC,090WC,089WC,090WC", "labexpid: LID46312,LID46311,LID46311,LID46312", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: cell", "localization description: Whole cell", "protocol: None", "protocol description: No special treatment or protocol applies", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 089WC,090WC", "labexpid: LID46311,LID46312", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS352007 SRX171099 SRR527642 100997219 100997219 1 FALSE FALSE 78238893 3669459136 breast mcf 2012-07-26T17:05:07.183 2012-07-26T18:05:13.867 2014-08-27T03:03:20.143 101 GSM973690 SRR527642.bw CSHL_RnaSeq_MCF-7_cell_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 089WC,090WC,089WC,090WC", "labexpid: LID46312,LID46311,LID46311,LID46312", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: cell", "localization description: Whole cell", "protocol: None", "protocol description: No special treatment or protocol applies", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 089WC,090WC", "labexpid: LID46311,LID46312", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS352008 SRX171100 SRR527643 94125187 94125187 1 FALSE FALSE 55416901 2407409785 lung imr90 2012-07-26T17:05:07.273 2012-07-26T18:05:13.960 2014-08-27T03:03:20.787 101 GSM973691 SRR527643.bw CSHL_RnaSeq_IMR90_cell_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045WC,045WC,046WC,046WC", "labexpid: LID45107,LID45107,LID45110,LID45110", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: None", "protocol description: No special treatment or protocol applies", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045WC,046WC", "labexpid: LID45107,LID45110", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS352008 SRX171100 SRR527644 116317041 116317041 1 FALSE FALSE 67440477 3247668545 lung imr90 2012-07-26T17:05:07.273 2012-07-26T18:05:13.960 2014-08-27T03:03:20.787 101 GSM973691 SRR527644.bw CSHL_RnaSeq_IMR90_cell_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045WC,045WC,046WC,046WC", "labexpid: LID45107,LID45107,LID45110,LID45110", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: None", "protocol description: No special treatment or protocol applies", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045WC,046WC", "labexpid: LID45107,LID45110", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS352009 SRX171101 SRR527645 118963395 118963395 1 FALSE FALSE 60661954 2607079283 brain sk 2012-07-26T17:05:07.357 2012-07-26T18:05:14.060 2014-08-27T03:03:21.317 101 GSM973692 SRR527645.bw CSHL_RnaSeq_SK-N-SH_cytosol_CIP-TAP_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 085C,086C,085C,086C", "labexpid: LID46274,LID46275,LID46274,LID46275", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "protocol: CIP-TAP", "protocol description: This kind of library was made from RNA < 200 nucleotides that was pre-treated sequentially with Calf Intestinal Alkaline Phosphatase followed by Tobacco Acid Pyrophosphatase. Hence, it will be enriched for capped RNAs.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 085C,086C", "labexpid: LID46274,LID46275", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads" ) SRP003754 SRS352009 SRX171101 SRR527646 107773894 107773894 1 FALSE FALSE 53442186 2670614956 brain sk 2012-07-26T17:05:07.357 2012-07-26T18:05:14.060 2014-08-27T03:03:21.317 101 GSM973692 SRR527646.bw CSHL_RnaSeq_SK-N-SH_cytosol_CIP-TAP_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 085C,086C,085C,086C", "labexpid: LID46274,LID46275,LID46274,LID46275", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "protocol: CIP-TAP", "protocol description: This kind of library was made from RNA < 200 nucleotides that was pre-treated sequentially with Calf Intestinal Alkaline Phosphatase followed by Tobacco Acid Pyrophosphatase. Hence, it will be enriched for capped RNAs.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 085C,086C", "labexpid: LID46274,LID46275", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads" ) SRP003754 SRS352010 SRX171102 SRR527647 93268667 93268667 1 FALSE FALSE 69070212 2812057521 lung imr90 2012-07-26T17:05:07.450 2012-07-26T18:05:14.160 2014-08-27T03:03:21.863 101 GSM973693 SRR527647.bw CSHL_RnaSeq_IMR90_cell_CIP-TAP_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045WC,045WC,046WC,046WC", "labexpid: LID45108,LID45111,LID45111,LID45108", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: CIP-TAP", "protocol description: This kind of library was made from RNA < 200 nucleotides that was pre-treated sequentially with Calf Intestinal Alkaline Phosphatase followed by Tobacco Acid Pyrophosphatase. Hence, it will be enriched for capped RNAs.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045WC,046WC", "labexpid: LID45108,LID45111", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS352010 SRX171102 SRR527648 80259111 80259111 1 FALSE FALSE 39167657 2045050069 lung imr90 2012-07-26T17:05:07.450 2012-07-26T18:05:14.160 2014-08-27T03:03:21.863 101 GSM973693 SRR527648.bw CSHL_RnaSeq_IMR90_cell_CIP-TAP_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045WC,045WC,046WC,046WC", "labexpid: LID45108,LID45111,LID45111,LID45108", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: CIP-TAP", "protocol description: This kind of library was made from RNA < 200 nucleotides that was pre-treated sequentially with Calf Intestinal Alkaline Phosphatase followed by Tobacco Acid Pyrophosphatase. Hence, it will be enriched for capped RNAs.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 045WC,046WC", "labexpid: LID45108,LID45111", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS352011 SRX171103 SRR527649 371836877 371836877 1 FALSE FALSE 318761477 22455166407 bone esc 2012-07-26T17:05:07.537 2012-07-26T18:05:14.260 2014-08-27T03:03:22.470 101 GSM977028 SRR527649.bw CSHL_RnaSeq_hMSC-BM_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 067WC,068WC,068WC,067WC", "labexpid: LID47658,LID47659,LID47659,LID47658", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "cell sex: B", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 067WC,068WC", "labexpid: LID47658,LID47659", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS352011 SRX171103 SRR527650 451611667 451611667 1 FALSE FALSE 379126745 25418301631 bone esc 2012-07-26T17:05:07.537 2012-07-26T18:05:14.260 2014-08-27T03:03:22.470 101 GSM977028 SRR527650.bw CSHL_RnaSeq_hMSC-BM_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 067WC,068WC,068WC,067WC", "labexpid: LID47658,LID47659,LID47659,LID47658", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "cell sex: B", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 067WC,068WC", "labexpid: LID47658,LID47659", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS352012 SRX171104 SRR527651 162181145 162181145 1 FALSE FALSE 120503030 6068095109 brain neural 2012-07-26T17:05:07.687 2012-07-26T18:05:14.430 2014-08-27T04:34:40.880 101 GSM977029 SRR527651.bw CSHL_RnaSeq_H1-neurons_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 095WC,096WC,095WC,096WC", "labexpid: LID48355,LID48356,LID48355,LID48356", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 095WC,096WC", "labexpid: LID48355,LID48356", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS352012 SRX171104 SRR527652 164642035 164642035 1 FALSE FALSE 131830816 7533534411 brain neural 2012-07-26T17:05:07.687 2012-07-26T18:05:14.430 2014-08-27T04:34:40.880 101 GSM977029 SRR527652.bw CSHL_RnaSeq_H1-neurons_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 095WC,096WC,095WC,096WC", "labexpid: LID48355,LID48356,LID48355,LID48356", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 095WC,096WC", "labexpid: LID48355,LID48356", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS352013 SRX171105 SRR527653 161333659 161333659 1 FALSE FALSE 135619700 8952321926 brain neural 2012-07-26T17:05:07.827 2012-07-26T18:05:14.567 2014-08-27T04:34:41.650 101 GSM977030 SRR527653.bw CSHL_RnaSeq_H1-neurons_cell_CIP-TAP_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 095WC,096WC,095WC,096WC", "labexpid: LID48354,LID48353,LID48354,LID48353", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: CIP-TAP", "protocol description: This kind of library was made from RNA < 200 nucleotides that was pre-treated sequentially with Calf Intestinal Alkaline Phosphatase followed by Tobacco Acid Pyrophosphatase. Hence, it will be enriched for capped RNAs.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 095WC,096WC", "labexpid: LID48353,LID48354", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS352013 SRX171105 SRR527654 150231584 150231584 1 FALSE FALSE 120019458 7057362356 brain neural 2012-07-26T17:05:07.827 2012-07-26T18:05:14.567 2014-08-27T04:34:41.650 101 GSM977030 SRR527654.bw CSHL_RnaSeq_H1-neurons_cell_CIP-TAP_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 095WC,096WC,095WC,096WC", "labexpid: LID48354,LID48353,LID48354,LID48353", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: CIP-TAP", "protocol description: This kind of library was made from RNA < 200 nucleotides that was pre-treated sequentially with Calf Intestinal Alkaline Phosphatase followed by Tobacco Acid Pyrophosphatase. Hence, it will be enriched for capped RNAs.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 095WC,096WC", "labexpid: LID48353,LID48354", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS352014 SRX171106 SRR527655 149665437 149665437 1 FALSE FALSE 105760110 4830150133 brain neural 2012-07-26T17:05:07.927 2012-07-26T18:05:14.657 2014-08-27T04:34:42.320 101 GSM977031 SRR527655.bw CSHL_RnaSeq_H1-neurons_cell_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 095WC,096WC,095WC,096WC", "labexpid: LID48357,LID48358,LID48357,LID48358", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: None", "protocol description: No special treatment or protocol applies", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 095WC,096WC", "labexpid: LID48357,LID48358", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS352014 SRX171106 SRR527656 146611477 146611477 1 FALSE FALSE 110206565 5643597235 brain neural 2012-07-26T17:05:07.927 2012-07-26T18:05:14.657 2014-08-27T04:34:42.320 101 GSM977031 SRR527656.bw CSHL_RnaSeq_H1-neurons_cell_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 095WC,096WC,095WC,096WC", "labexpid: LID48357,LID48358,LID48357,LID48358", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: None", "protocol description: No special treatment or protocol applies", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 095WC,096WC", "labexpid: LID48357,LID48358", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS352015 SRX171107 SRR527657 158525252 158525252 1 FALSE FALSE 152100753 11260709634 blood gm12878 2012-07-26T17:05:08.107 2012-07-26T18:05:14.743 2014-08-27T04:34:42.980 101 GSM977032 SRR527657.bw CSHL_RnaSeq_GM12878_nucleolus_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 091NL,092NL,091NL,092NL", "labexpid: LID47654,LID47653,LID47653,LID47654", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: nucleolus", "localization description: The part of the nucleus where ribosomal RNA is actively transcribed", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 091NL,092NL", "labexpid: LID47653,LID47654", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads" ) SRP003754 SRS352015 SRX171107 SRR527658 127524763 127524763 1 FALSE FALSE 120673654 8765924449 blood gm12878 2012-07-26T17:05:08.107 2012-07-26T18:05:14.743 2014-08-27T04:34:42.980 101 GSM977032 SRR527658.bw CSHL_RnaSeq_GM12878_nucleolus_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 091NL,092NL,091NL,092NL", "labexpid: LID47654,LID47653,LID47653,LID47654", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: nucleolus", "localization description: The part of the nucleus where ribosomal RNA is actively transcribed", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 091NL,092NL", "labexpid: LID47653,LID47654", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads" ) SRP003754 SRS352016 SRX171108 SRR527659 87744429 87744429 1 FALSE FALSE 75593094 5090443071 placenta esc 2012-07-26T17:05:08.310 2012-07-26T18:05:14.937 2014-08-27T04:34:43.763 101 GSM977033 SRR527659.bw CSHL_RnaSeq_HVMF_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 051WC,052WC,051WC,052WC", "labexpid: LID47244,LID47243,LID47244,LID47243", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 051WC", "labexpid: LID47243", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1") SRP003754 SRS352016 SRX171108 SRR527660 108490495 108490495 1 FALSE FALSE 93297445 6315018043 placenta esc 2012-07-26T17:05:08.310 2012-07-26T18:05:14.937 2014-08-27T04:34:43.763 101 GSM977033 SRR527660.bw CSHL_RnaSeq_HVMF_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 051WC,052WC,051WC,052WC", "labexpid: LID47244,LID47243,LID47244,LID47243", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 051WC", "labexpid: LID47243", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1") SRP003754 SRS352017 SRX171109 SRR527661 102410792 102410792 1 FALSE FALSE 88853213 6336461689 skin esc 2012-07-26T17:05:08.490 2012-07-26T18:05:15.393 2014-08-27T04:34:44.323 101 GSM977034 SRR527661.bw CSHL_RnaSeq_NHDF_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 050WC,049WC,050WC,049WC", "labexpid: LID47241,LID47242,LID47242,LID47241", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 050WC", "labexpid: LID47242", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 2") SRP003754 SRS352017 SRX171109 SRR527662 97445227 97445227 1 FALSE FALSE 83288316 5794101785 skin esc 2012-07-26T17:05:08.490 2012-07-26T18:05:15.393 2014-08-27T04:34:44.323 101 GSM977034 SRR527662.bw CSHL_RnaSeq_NHDF_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 050WC,049WC,050WC,049WC", "labexpid: LID47241,LID47242,LID47242,LID47241", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 050WC", "labexpid: LID47242", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 2") SRP003754 SRS352018 SRX171110 SRR527663 104013346 104013346 1 FALSE FALSE 92230970 6669952341 blood vessel esc 2012-07-26T17:05:08.670 2012-07-26T18:05:15.557 2014-08-27T04:34:44.990 101 GSM977035 SRR527663.bw CSHL_RnaSeq_HAoAF_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 055WC,056WC,056WC,055WC", "labexpid: LID47434,LID47433,LID47434,LID47433", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 056WC", "labexpid: LID47434", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 2") SRP003754 SRS352018 SRX171110 SRR527664 82497765 82497765 1 FALSE FALSE 68345392 4662050428 blood vessel esc 2012-07-26T17:05:08.670 2012-07-26T18:05:15.557 2014-08-27T04:34:44.990 101 GSM977035 SRR527664.bw CSHL_RnaSeq_HAoAF_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 055WC,056WC,056WC,055WC", "labexpid: LID47434,LID47433,LID47434,LID47433", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 056WC", "labexpid: LID47434", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 2") SRP003754 SRS352019 SRX171111 SRR527665 106719542 106719542 1 FALSE FALSE 89697311 5872069600 bone esc 2012-07-26T17:05:08.910 2012-07-26T18:05:15.677 2014-08-27T04:34:45.650 101 GSM977036 SRR527665.bw CSHL_RnaSeq_HOB_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 053WC,054WC,054WC,053WC", "labexpid: LID47431,LID47431,LID47432,LID47432", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 054WC", "labexpid: LID47432", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 2") SRP003754 SRS352019 SRX171111 SRR527666 69721398 69721398 1 FALSE FALSE 58048337 3936609798 bone esc 2012-07-26T17:05:08.910 2012-07-26T18:05:15.677 2014-08-27T04:34:45.650 101 GSM977036 SRR527666.bw CSHL_RnaSeq_HOB_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 053WC,054WC,054WC,053WC", "labexpid: LID47431,LID47431,LID47432,LID47432", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 054WC", "labexpid: LID47432", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 2") SRP003754 SRS352020 SRX171112 SRR527667 146643712 146643712 1 FALSE FALSE 96131961 4848404959 epithelium esc 2012-07-26T17:05:09.080 2012-07-26T18:05:15.807 2014-08-27T04:34:46.300 101 GSM977037 SRR527667.bw CSHL_RnaSeq_HCH_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 059WC,059WC,060WC,060WC", "labexpid: LID47475,LID47475,LID47476,LID47476", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 059WC", "labexpid: LID47475", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1") SRP003754 SRS352020 SRX171112 SRR527668 115974527 115974527 1 FALSE FALSE 83357354 4753741492 epithelium esc 2012-07-26T17:05:09.080 2012-07-26T18:05:15.807 2014-08-27T04:34:46.300 101 GSM977037 SRR527668.bw CSHL_RnaSeq_HCH_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 059WC,059WC,060WC,060WC", "labexpid: LID47475,LID47475,LID47476,LID47476", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 059WC", "labexpid: LID47475", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1") SRP003754 SRS352021 SRX171113 SRR527669 113512578 113512578 1 FALSE FALSE 84890142 4974911913 skin esc 2012-07-26T17:05:09.230 2012-07-26T18:05:15.897 2014-08-27T04:34:46.960 101 GSM977038 SRR527669.bw CSHL_RnaSeq_HFDPC_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 061WC,062WC,062WC,061WC", "labexpid: LID47478,LID47477,LID47478,LID47477", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 062WC", "labexpid: LID47478", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 2") SRP003754 SRS352021 SRX171113 SRR527670 123054185 123054185 1 FALSE FALSE 95584157 5772380347 skin esc 2012-07-26T17:05:09.230 2012-07-26T18:05:15.897 2014-08-27T04:34:46.960 101 GSM977038 SRR527670.bw CSHL_RnaSeq_HFDPC_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 061WC,062WC,062WC,061WC", "labexpid: LID47478,LID47477,LID47478,LID47477", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 062WC", "labexpid: LID47478", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 2") SRP003754 SRS352022 SRX171114 SRR527671 109168529 109168529 1 FALSE FALSE 97334576 7093294637 muscle esc 2012-07-26T17:05:09.387 2012-07-26T18:05:16.030 2014-08-27T04:34:47.757 101 GSM977039 SRR527671.bw CSHL_RnaSeq_SkMC_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 047WC,048WC,047WC,048WC", "labexpid: LID47239,LID47240,LID47239,LID47240", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 048WC", "labexpid: LID47240", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 2") SRP003754 SRS352022 SRX171114 SRR527672 107103467 107103467 1 FALSE FALSE 95558716 6846119723 muscle esc 2012-07-26T17:05:09.387 2012-07-26T18:05:16.030 2014-08-27T04:34:47.757 101 GSM977039 SRR527672.bw CSHL_RnaSeq_SkMC_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 047WC,048WC,047WC,048WC", "labexpid: LID47239,LID47240,LID47239,LID47240", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 048WC", "labexpid: LID47240", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 2") SRP003754 SRS352023 SRX171115 SRR527673 89357091 89357091 1 FALSE FALSE 74761000 5251053170 blood vessel esc 2012-07-26T17:05:09.507 2012-07-26T18:05:16.150 2014-08-27T04:34:48.423 101 GSM977040 SRR527673.bw CSHL_RnaSeq_HAoEC_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 058WC,057WC,057WC,058WC", "labexpid: LID47435,LID47436,LID47435,LID47436", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 057WC", "labexpid: LID47435", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1") SRP003754 SRS352024 SRX171116 SRR527675 209765783 209765783 1 FALSE FALSE 169599676 10806420481 epithelium esc 2012-07-26T17:05:09.657 2012-07-26T18:05:16.240 2014-08-27T04:34:49.090 101 GSM977041 SRR527675.bw CSHL_RnaSeq_hMSC-AT_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 065WC,065WC,066WC,066WC", "labexpid: LID47479,LID47479,LID47480,LID47480", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 065WC", "labexpid: LID47479", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1") SRP003754 SRS352024 SRX171116 SRR527676 222773205 222773205 1 FALSE FALSE 186180012 11902426624 epithelium esc 2012-07-26T17:05:09.657 2012-07-26T18:05:16.240 2014-08-27T04:34:49.090 101 GSM977041 SRR527676.bw CSHL_RnaSeq_hMSC-AT_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 065WC,065WC,066WC,066WC", "labexpid: LID47479,LID47479,LID47480,LID47480", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 065WC", "labexpid: LID47479", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1") SRP003754 SRS352025 SRX171117 SRR527677 54895310 54895310 1 FALSE FALSE 51626279 4034109714 blood gm12878 2012-07-26T17:05:09.750 2012-07-26T18:05:16.380 2014-08-27T04:34:49.723 101 GSM977042 SRR527677.bw CSHL_RnaSeq_GM12878_chromatin_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 091CH,091CH,092CH,092CH", "labexpid: LID47655,LID47656,LID47655,LID47656", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: chromatin", "localization description: Nuclear DNA and associated proteins", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 091CH,092CH", "labexpid: LID47655,LID47656", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads" ) SRP003754 SRS352025 SRX171117 SRR527678 87823088 87823088 1 FALSE FALSE 84033560 6190714550 blood gm12878 2012-07-26T17:05:09.750 2012-07-26T18:05:16.380 2014-08-27T04:34:49.723 101 GSM977042 SRR527678.bw CSHL_RnaSeq_GM12878_chromatin_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 091CH,091CH,092CH,092CH", "labexpid: LID47655,LID47656,LID47655,LID47656", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 3,4", "localization: chromatin", "localization description: Nuclear DNA and associated proteins", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 091CH,092CH", "labexpid: LID47655,LID47656", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads" ) SRP003754 SRS352026 SRX171118 SRR527679 33446038 33446038 1 FALSE FALSE 30169195 891957224 blood esc 2012-07-26T17:05:09.897 2012-07-26T18:05:16.527 2014-08-27T03:11:22.140 36 GSM977043 SRR527679.bw CSHL_RnaSeq_CD20+_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 042WC,041WC,042WC,041WC", "labexpid: LID44362,LID44363,LID44362,LID44363", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 041WC,042WC", "labexpid: LID44362,LID44363", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads") SRP003754 SRS352026 SRX171118 SRR527680 33728408 33728408 1 FALSE FALSE 31377565 922526709 blood esc 2012-07-26T17:05:09.897 2012-07-26T18:05:16.527 2014-08-27T03:11:22.140 36 GSM977043 SRR527680.bw CSHL_RnaSeq_CD20+_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 042WC,041WC,042WC,041WC", "labexpid: LID44362,LID44363,LID44362,LID44363", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 041WC,042WC", "labexpid: LID44362,LID44363", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads") SRP003754 SRS352027 SRX171119 SRR527681 35935988 35935988 1 FALSE FALSE 31444826 856321540 monocytes cd14 2012-07-26T17:05:10.080 2012-07-26T18:05:16.637 2014-08-27T03:11:22.500 36 GSM977044 SRR527681.bw CSHL_RnaSeq_Monocytes-CD14+_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 040WC,039WC,039WC,040WC", "labexpid: LID44360,LID44361,LID44360,LID44361", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 039WC,040WC", "labexpid: LID44360,LID44361", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads") SRP003754 SRS352027 SRX171119 SRR527682 35452694 35452694 1 FALSE FALSE 30781140 897095845 monocytes cd14 2012-07-26T17:05:10.080 2012-07-26T18:05:16.637 2014-08-27T03:11:22.500 36 GSM977044 SRR527682.bw CSHL_RnaSeq_Monocytes-CD14+_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 040WC,039WC,039WC,040WC", "labexpid: LID44360,LID44361,LID44360,LID44361", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 039WC,040WC", "labexpid: LID44360,LID44361", "labversion: iIDR", "readtype: 1x36", "readtype description: Single 36 nt reads") SRP003754 SRS352028 SRX171120 SRR527683 202827711 202827711 1 FALSE FALSE 170117835 11696637677 skin esc 2012-07-26T17:05:10.230 2012-07-26T18:05:16.757 2014-08-27T03:11:22.913 101 GSM977045 SRR527683.bw CSHL_RnaSeq_NHEM.f_M2_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 081WC,081WC,082WC,082WC", "labexpid: LID47611,LID47612,LID47611,LID47612", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 081WC,082WC", "labexpid: LID47611,LID47612", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS352028 SRX171120 SRR527684 151570602 151570602 1 FALSE FALSE 130001566 8928112486 skin esc 2012-07-26T17:05:10.230 2012-07-26T18:05:16.757 2014-08-27T03:11:22.913 101 GSM977045 SRR527684.bw CSHL_RnaSeq_NHEM.f_M2_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 081WC,081WC,082WC,082WC", "labexpid: LID47611,LID47612,LID47611,LID47612", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 081WC,082WC", "labexpid: LID47611,LID47612", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS352029 SRX171121 SRR527685 245483083 245483083 1 FALSE FALSE 221709273 16209868681 adipose tissue esc 2012-07-26T17:05:10.390 2012-07-26T18:05:16.887 2014-08-27T03:11:23.467 101 GSM977046 SRR527685.bw CSHL_RnaSeq_HWP_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 079WC,080WC,079WC,080WC", "labexpid: LID47610,LID47609,LID47610,LID47609", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 079WC,080WC", "labexpid: LID47609,LID47610", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS352029 SRX171121 SRR527686 242641273 242641273 1 FALSE FALSE 217590151 15755926352 adipose tissue esc 2012-07-26T17:05:10.390 2012-07-26T18:05:16.887 2014-08-27T03:11:23.467 101 GSM977046 SRR527686.bw CSHL_RnaSeq_HWP_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 079WC,080WC,079WC,080WC", "labexpid: LID47610,LID47609,LID47610,LID47609", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 079WC,080WC", "labexpid: LID47609,LID47610", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS352030 SRX171122 SRR527687 245196246 245196246 1 FALSE FALSE 212752114 14803228962 skin esc 2012-07-26T17:05:10.493 2012-07-26T18:05:16.983 2014-08-27T03:14:30.010 101 GSM977047 SRR527687.bw CSHL_RnaSeq_NHEM_M2_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 083WC,083WC,084WC,084WC", "labexpid: LID47613,LID47614,LID47613,LID47614", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 083WC,084WC", "labexpid: LID47613,LID47614", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS352030 SRX171122 SRR527688 105892586 105892586 1 FALSE FALSE 93636706 6700495981 skin esc 2012-07-26T17:05:10.493 2012-07-26T18:05:16.983 2014-08-27T03:14:30.010 101 GSM977047 SRR527688.bw CSHL_RnaSeq_NHEM_M2_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 083WC,083WC,084WC,084WC", "labexpid: LID47613,LID47614,LID47613,LID47614", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 083WC,084WC", "labexpid: LID47613,LID47614", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS352031 SRX171123 SRR527689 182076162 182076162 1 FALSE FALSE 149094304 10094860322 umbilical cord other 2012-07-26T17:05:10.590 2012-07-26T18:05:17.090 2014-08-27T03:14:30.680 101 GSM977048 SRR527689.bw CSHL_RnaSeq_hMSC-UC_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 069WC,069WC,070WC,070WC", "labexpid: LID47515,LID47516,LID47516,LID47515", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 069WC,070WC", "labexpid: LID47515,LID47516", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS352031 SRX171123 SRR527690 223679512 223679512 1 FALSE FALSE 190738119 12810701897 umbilical cord other 2012-07-26T17:05:10.590 2012-07-26T18:05:17.090 2014-08-27T03:14:30.680 101 GSM977048 SRR527690.bw CSHL_RnaSeq_hMSC-UC_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 069WC,069WC,070WC,070WC", "labexpid: LID47515,LID47516,LID47516,LID47515", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 069WC,070WC", "labexpid: LID47515,LID47516", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS352032 SRX171124 SRR527691 214542445 214542445 1 FALSE FALSE 182275325 12333916020 placenta leukemia 2012-07-26T17:05:10.700 2012-07-26T18:05:17.187 2014-08-27T03:14:31.530 101 GSM977049 SRR527691.bw CSHL_RnaSeq_HPC-PL_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 071WC,072WC,072WC,071WC", "labexpid: LID47518,LID47517,LID47518,LID47517", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 071WC,072WC", "labexpid: LID47517,LID47518", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS352032 SRX171124 SRR527692 235974567 235974567 1 FALSE FALSE 142826092 7327700166 placenta leukemia 2012-07-26T17:05:10.700 2012-07-26T18:05:17.187 2014-08-27T03:14:31.530 101 GSM977049 SRR527692.bw CSHL_RnaSeq_HPC-PL_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 071WC,072WC,072WC,071WC", "labexpid: LID47518,LID47517,LID47518,LID47517", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 071WC,072WC", "labexpid: LID47517,LID47518", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS352033 SRX171125 SRR527693 73660945 73660945 1 FALSE FALSE 63979173 4513298204 breast esc 2012-07-26T17:05:10.873 2012-07-26T18:05:17.290 2014-08-27T03:14:32.230 101 GSM977050 SRR527693.bw CSHL_RnaSeq_HMEpC_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 063WC", "labexpid: LID47657", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 063WC", "labexpid: LID47657", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS352034 SRX171126 SRR527694 212860482 212860482 1 FALSE FALSE 188913098 13492868400 blood vessel esc 2012-07-26T17:05:11.050 2012-07-26T18:05:17.427 2014-08-27T03:14:32.903 101 GSM977051 SRR527694.bw CSHL_RnaSeq_HSaVEC_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 094WC,093WC,093WC,094WC", "labexpid: LID47615,LID47615,LID47616,LID47616", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 093WC,094WC", "labexpid: LID47615,LID47616", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS352034 SRX171126 SRR527695 210418827 210418827 1 FALSE FALSE 187099480 13632098371 blood vessel esc 2012-07-26T17:05:11.050 2012-07-26T18:05:17.427 2014-08-27T03:14:32.903 101 GSM977051 SRR527695.bw CSHL_RnaSeq_HSaVEC_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 094WC,093WC,093WC,094WC", "labexpid: LID47615,LID47615,LID47616,LID47616", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 093WC,094WC", "labexpid: LID47615,LID47616", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS352035 SRX171127 SRR527696 229315854 229315854 1 FALSE FALSE 203032477 15128879344 placenta esc 2012-07-26T17:05:11.210 2012-07-26T18:05:17.570 2014-08-27T03:14:33.480 101 GSM977052 SRR527696.bw CSHL_RnaSeq_HPIEpC_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 073WC,074WC,073WC,074WC", "labexpid: LID47520,LID47519,LID47519,LID47520", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 073WC,074WC", "labexpid: LID47519,LID47520", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS352035 SRX171127 SRR527697 169606661 169606661 1 FALSE FALSE 143043561 10406973261 placenta esc 2012-07-26T17:05:11.210 2012-07-26T18:05:17.570 2014-08-27T03:14:33.480 101 GSM977052 SRR527697.bw CSHL_RnaSeq_HPIEpC_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 073WC,074WC,073WC,074WC", "labexpid: LID47520,LID47519,LID47519,LID47520", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 073WC,074WC", "labexpid: LID47519,LID47520", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads") SRP003754 SRS352023 SRX171115 SRR527674 106194644 0 0 FALSE FALSE 0 NA blood vessel esc 2012-07-26T17:05:09.507 2012-07-26T18:05:16.150 2014-08-27T04:34:48.423 101 GSM977040 NA CSHL_RnaSeq_HAoEC_cell_TAP-Only_shortTotal c("datatype: RnaSeq", "datatype description: Sequencing analysis of RNA expression", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 058WC,057WC,057WC,058WC", "labexpid: LID47435,LID47436,LID47435,LID47436", "labversion: iIDR", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "protocol: TAP-Only", "protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.", "rnaextract: shortTotal", "rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation", "biorep: 057WC", "labexpid: LID47435", "readtype: 1x101", "readtype description: Single 101 nt reads", "replicate: 1")