datatype description: Sequencing analysis of RNA expression
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
rnaextract description: Poly(A)+ RNA longer than 200 nt
readtype description: Paired 76 nt directed reads
cell description: skin fibroblast, "The line was established from skin taken from normal foreskin." - ATCC. (PMID: 9916803)
localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA
rnaextract description: Poly(A)- RNA longer than 200 nt
localization description: The fluid between the cells outer membrane and the nucleus
readtype description: Paired 76 n.t. directed reads
cell description: mammary gland, adenocarcinoma. (PMID: 4357757), newly promoted to tier 2: not in 2011 analysis
rnaextract description: Total RNA extract (longer than 200 nt)
localization description: That part of the nuclear content other than the chromosomes or the nucleolus
cell description: skeletal muscle myoblasts
localization description: Nuclear DNA and associated proteins
localization description: The part of the nucleus where ribosomal RNA is actively transcribed
cell description: neuroblastoma cell line, treatment: differentiated with retinoic acid, (Biedler, et al. Morphology and Growth, Tumorigenicity, and Cytogenetics of Human Neuroblastoma Cells in Continuous Culture. Cancer Research 33, 2643-2652, November 1973.)
cell description: mammary epithelial cells
cell description: epithelial cell line derived from a lung carcinoma tissue. (PMID: 175022), "This line was initiated in 1972 by D.J. Giard, et al. through explant culture of lung carcinomatous tissue from a 58-year-old caucasian male." - ATCC, newly promoted to tier 2: not in 2011 analysis
readtype description: Paired 101 nt directed reads