project sample experiment run read_count_as_reported_by_sra reads_downloaded proportion_of_reads_reported_by_sra_downloaded paired_end sra_misreported_paired_end mapped_read_count auc sharq_beta_tissue sharq_beta_cell_type biosample_submission_date biosample_publication_date biosample_update_date avg_read_length geo_accession bigwig_file title characteristics SRP008331 SRS265103 SRX098286 SRR346464 33795402 33795402 1 FALSE FALSE 23394157 836429976 breast bj 2011-09-22T14:14:06.113 2011-10-11T15:45:29.530 2014-03-06T14:46:25.437 36 GSM800443 SRR346464.bw UHR_directional_Tn-RNA-seq c("protocol: Directional Tn-RNA-seq", "mrna input: 10 ng") SRP008331 SRS265104 SRX098287 SRR346465 37981706 37981706 1 FALSE FALSE 37233607 1751791484 breast bj 2011-09-22T14:14:06.213 2011-10-11T15:45:29.530 2014-03-06T14:46:25.481 51 GSM800445 SRR346465.bw UHR_directional_standard c("protocol: Directional RNA ligation", "mrna input: 10 ng") SRP008331 SRS265105 SRX098288 SRR346466 21159599 21159599 1 FALSE FALSE 16503418 589681252 breast bj 2011-09-22T14:14:06.233 2011-10-11T15:45:29.530 2014-03-06T14:46:25.520 36 GSM800447 SRR346466.bw ECC1_standard_rep1 c("cell line: ECC-1", "protocol: Standard RNA-seq", "mrna input: 50 ng") SRP008331 SRS265106 SRX098289 SRR346467 35521958 35521958 1 FALSE FALSE 33397754 1196669594 breast bj 2011-09-22T14:14:06.253 2011-10-11T15:45:29.530 2014-03-06T14:46:25.556 36 GSM800449 SRR346467.bw ECC1_standard_rep2 c("cell line: ECC-1", "protocol: Standard RNA-seq", "mrna input: 50 ng") SRP008331 SRS265107 SRX098290 SRR346468 42612573 42612573 1 FALSE FALSE 35631272 1266105652 breast bj 2011-09-22T14:14:06.273 2011-10-11T15:45:29.530 2014-03-06T14:46:25.587 36 GSM800451 SRR346468.bw ECC1_Tn-RNA-seq_rep1 c("cell line: ECC-1", "protocol: Tn-RNA-seq", "mrna input: 50 ng") SRP008331 SRS265108 SRX098291 SRR346469 34705972 34705972 1 FALSE FALSE 30217549 1067039801 breast bj 2011-09-22T14:14:06.297 2011-10-11T15:45:29.530 2014-03-06T14:46:25.617 36 GSM800454 SRR346469.bw ECC1_Tn-RNA-seq_rep2 c("cell line: ECC-1", "protocol: Tn-RNA-seq", "mrna input: 50 ng") SRP008331 SRS265109 SRX098292 SRR346470 63285057 63285057 1 FALSE FALSE 39777442 1393088065 breast bj 2011-09-22T14:14:06.317 2011-10-11T15:45:29.530 2014-03-06T14:46:25.651 36 GSM800457 SRR346470.bw ECC1_directional_Tn-RNA-seq_rep1 c("cell line: ECC-1", "protocol: Directional Tn-RNA-seq", "mrna input: 50 ng") SRP008331 SRS265110 SRX098293 SRR346471 61172413 61172413 1 FALSE FALSE 41523908 1468364820 breast bj 2011-09-22T14:14:06.337 2011-10-11T15:45:29.530 2014-03-06T14:46:25.688 36 GSM800459 SRR346471.bw ECC1_directional_Tn-RNA-seq_rep2 c("cell line: ECC-1", "protocol: Directional Tn-RNA-seq", "mrna input: 50 ng") SRP008331 SRS265111 SRX098294 SRR346472 41054381 41054381 1 FALSE FALSE 35496670 1261180523 breast bj 2011-09-22T14:14:06.357 2011-10-11T15:45:29.530 2014-03-06T14:46:25.718 36 GSM800462 SRR346472.bw ECC1_Tn-RNA-seq_10ng_mRNA c("cell line: ECC-1", "protocol: Tn-RNA-seq", "mrna input: 10 ng") SRP008331 SRS265112 SRX098295 SRR346473 31162137 31162137 1 FALSE FALSE 30011133 1072683749 breast bj 2011-09-22T14:14:06.380 2011-10-11T15:45:29.530 2014-03-06T14:46:25.756 36 GSM800464 SRR346473.bw ECC1_Tn-RNA-seq_5ng_mRNA c("cell line: ECC-1", "protocol: Tn-RNA-seq", "mrna input: 5 ng") SRP008331 SRS265113 SRX098296 SRR346474 26653273 26653273 1 FALSE FALSE 25375210 906854510 breast bj 2011-09-22T14:14:06.400 2011-10-11T15:45:29.530 2014-03-06T14:46:25.788 36 GSM800466 SRR346474.bw ECC1_Tn-RNA-seq_1ng_mRNA c("cell line: ECC-1", "protocol: Tn-RNA-seq", "mrna input: 1 ng") SRP008331 SRS265114 SRX098297 SRR346475 29267785 29267785 1 FALSE FALSE 27795146 993849331 breast bj 2011-09-22T14:14:06.420 2011-10-11T15:45:29.530 2014-03-06T14:46:25.823 36 GSM800468 SRR346475.bw ECC1_Tn-RNA-seq_500pg_mRNA c("cell line: ECC-1", "protocol: Tn-RNA-seq", "mrna input: 500 pg") SRP008331 SRS265115 SRX098298 SRR346476 104354358 104354358 1 FALSE FALSE 100583363 4965790893 breast bj 2011-09-22T14:14:06.440 2011-10-11T15:45:29.530 2014-03-06T14:46:25.864 50 GSM800469 SRR346476.bw ECC1_Tn-RNA-seq_100pg_mRNA c("cell line: ECC-1", "protocol: Tn-RNA-seq", "mrna input: 100 pg") SRP008331 SRS265116 SRX098299 SRR346477 82759538 82759538 1 FALSE FALSE 68101009 3354598414 breast bj 2011-09-22T14:14:06.460 2011-10-11T15:45:29.530 2014-03-06T14:46:25.900 50 GSM800470 SRR346477.bw ECC1_Tn-RNA-seq_10pg_mRNA c("cell line: ECC-1", "protocol: Tn-RNA-seq", "mrna input: 10 pg") SRP008331 SRS265117 SRX098300 SRR346478 3417544 3417544 1 FALSE FALSE 1907483 93143962 breast bj 2011-09-22T14:14:06.480 2011-10-11T15:45:29.530 2014-03-06T14:46:25.936 50 GSM800471 SRR346478.bw ECC1_Tn-RNA-seq_1pg_mRNA c("cell line: ECC-1", "protocol: Tn-RNA-seq", "mrna input: 1 pg")