project sample experiment run read_count_as_reported_by_sra reads_downloaded proportion_of_reads_reported_by_sra_downloaded paired_end sra_misreported_paired_end mapped_read_count auc sharq_beta_tissue sharq_beta_cell_type biosample_submission_date biosample_publication_date biosample_update_date avg_read_length geo_accession bigwig_file title characteristics SRP009266 SRS270059 SRX105222 SRR363855 83960627 83960627 1 FALSE FALSE 15014841 397488205 blood vessel huvec 2011-11-10T13:02:04.107 2011-11-10T13:02:06.583 2014-08-27T04:15:17.007 36 GSM830519 SRR363855.bw GIS_RnaPet_HUVEC_nucleus_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: gen0118N", "labexpid: RHH001", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads", "cell sex: U", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: gen0118N", "labexpid: RHH001", "labversion: clone-free", "replicate: 1", "replicate description: tier 1") SRP009266 SRS270060 SRX105223 SRR363856 4063024 4063024 1 FALSE FALSE 181834 3928984 prostate esc 2011-11-10T13:02:04.140 2011-11-10T13:02:06.583 2014-08-27T03:59:45.823 36 GSM830520 SRR363856.bw GIS_RnaPet_prostate_cell_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: gen0160WC", "labexpid: DHP001", "labversion: clone-based", "readtype: 2x36", "readtype description: Paired 36 nt reads", "localization: cell", "localization description: Whole cell", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: gen0160WC", "labexpid: DHP001", "labversion: clone-based", "replicate: 1", "replicate description: tier 1") SRP009266 SRS270061 SRX105224 SRR363857 9380284 9380284 1 TRUE FALSE 576376 13318242 blood k562 2011-11-10T13:02:04.173 2011-11-10T13:02:06.583 2014-08-27T03:59:46.340 102 GSM830521 SRR363857.bw GIS_RnaPet_K562_nucleolus_total c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: total", "rnaextract description: Total RNA extract (longer than 200 nt)", "biorep: gen0145NL", "labexpid: DHK008", "labversion: clone-based", "readtype: 2x36", "readtype description: Paired 36 nt reads", "cell sex: F", "localization: nucleolus", "localization description: The part of the nucleus where ribosomal RNA is actively transcribed", "rnaextract: total", "rnaextract description: Total RNA extract (longer than 200 nt)", "biorep: gen0145NL", "labexpid: DHK008", "labversion: clone-based", "replicate: 1", "replicate description: tier 1") SRP009266 SRS270062 SRX105225 SRR363858 52208918 52208918 1 TRUE FALSE 43988077 1136902101 skin esc 2011-11-10T13:02:04.210 2011-11-10T13:02:06.583 2014-08-27T03:59:47.440 72 GSM830522 SRR363858.bw GIS_RnaPet_NHEK_cytosol_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: gen0156C", "labexpid: IHN011", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads", "cell sex: U", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: gen0156C", "labexpid: IHN011", "labversion: clone-free", "replicate: 1", "replicate description: tier 1") SRP009266 SRS270063 SRX105226 SRR363859 40177953 40177953 1 FALSE FALSE 35367054 928645625 skin esc 2011-11-10T13:02:04.243 2011-11-10T13:02:06.583 2014-08-27T03:59:48.257 36 GSM830523 SRR363859.bw GIS_RnaPet_NHEK_nucleus_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: gen0158N", "labexpid: IHN012", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads", "cell sex: U", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: gen0158N", "labexpid: IHN012", "labversion: clone-free", "replicate: 1", "replicate description: tier 1") SRP009266 SRS270064 SRX105220 SRR363860 1474916 1474916 1 FALSE FALSE 54468 1435493 blood k562 2011-11-10T13:02:04.277 2011-11-10T13:02:06.583 2014-08-27T03:59:49.153 50 GSM830524 SRR363860.bw GIS_RnaPet_K562_nucleoplasm_total c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: total", "rnaextract description: Total RNA extract (longer than 200 nt)", "biorep: gen0148NP", "labexpid: PHK002", "labversion: clone-based", "readtype: 2x36", "readtype description: Paired 36 nt reads", "cell sex: F", "localization: nucleoplasm", "localization description: That part of the nuclear content other than the chromosomes or the nucleolus", "rnaextract: total", "rnaextract description: Total RNA extract (longer than 200 nt)", "biorep: gen0148NP", "labexpid: PHK002", "labversion: clone-based", "replicate: 1", "replicate description: tier 1") SRP009266 SRS270065 SRX105227 SRR363861 25489088 25489088 1 TRUE FALSE 876353 19514183 liver hepg2 2011-11-10T13:02:04.313 2011-11-10T13:02:06.583 2014-08-27T04:07:22.520 102 GSM830525 SRR363861.bw GIS_RnaPet_HepG2_cytosol_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "cell description: hepatocellular carcinoma", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: gen0126C", "labexpid: DHH002", "labversion: clone-based", "readtype: 2x36", "readtype description: Paired 36 nt reads", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: gen0126C", "labexpid: DHH002", "labversion: clone-based", "replicate: 1", "replicate description: tier 1") SRP009266 SRS270066 SRX105228 SRR363862 25823870 25823870 1 TRUE FALSE 1059573 25044096 blood k562 2011-11-10T13:02:04.347 2011-11-10T13:02:06.583 2014-08-27T04:07:22.800 74 GSM830526 SRR363862.bw GIS_RnaPet_K562_nucleus_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: gen0150N", "labexpid: DHK006", "labversion: clone-based", "readtype: 2x36", "readtype description: Paired 36 nt reads", "cell sex: F", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: gen0150N", "labexpid: DHK006", "labversion: clone-based", "replicate: 1", "replicate description: tier 1") SRP009266 SRS270067 SRX105229 SRR363863 122616464 122616464 1 TRUE FALSE 9911643 203317205 blood k562 2011-11-10T13:02:04.380 2011-11-10T13:02:06.583 2014-08-27T03:55:14.087 69 GSM830527 SRR363863.bw GIS_RnaPet_K562_polysome_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: gen0153P", "labexpid: DHK007", "labversion: clone-based", "readtype: 2x36", "readtype description: Paired 36 nt reads", "cell sex: F", "localization: polysome", "localization description: Strand of mRNA with ribosomes attached", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: gen0153P", "labexpid: DHK007", "labversion: clone-based", "replicate: 1", "replicate description: tier 1") SRP009266 SRS270071 SRX105233 SRR363868 33741208 33741208 1 TRUE FALSE 1543096 34901654 liver hepg2 2011-11-10T13:02:04.517 2011-11-10T13:02:06.583 2014-08-27T03:55:14.623 102 GSM830531 SRR363868.bw GIS_RnaPet_HepG2_nucleus_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "cell description: hepatocellular carcinoma", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: gen0129N", "labexpid: DHH003", "labversion: clone-based", "readtype: 2x36", "readtype description: Paired 36 nt reads", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: gen0129N", "labexpid: DHH003", "labversion: clone-based", "replicate: 1", "replicate description: tier 1") SRP009266 SRS270072 SRX105234 SRR363869 50218723 50218723 1 FALSE FALSE 37565896 984679371 stem cell esc 2011-11-10T13:02:04.550 2011-11-10T13:02:06.583 2014-08-27T03:55:15.177 36 GSM830532 SRR363869.bw GIS_RnaPet_H1-hESC_cell_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: gen0114WC", "labexpid: IHE001", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads", "cell sex: M", "localization: cell", "localization description: Whole cell", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: gen0114WC", "labexpid: IHE001", "labversion: clone-free", "replicate: 1", "replicate description: tier 1") SRP009266 SRS270073 SRX105235 SRR363870 173168616 173168616 1 TRUE FALSE 76853108 1993517491 cervix s3 2011-11-10T13:02:04.587 2011-11-10T13:02:06.583 2014-08-27T03:55:15.643 72 GSM830533 SRR363870.bw GIS_RnaPet_HeLa-S3_cytosol_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: gen0122C", "labexpid: RHH002", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads", "cell sex: F", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: gen0122C", "labexpid: RHH002", "labversion: clone-free", "replicate: 1", "replicate description: tier 1") SRP009266 SRS270074 SRX105236 SRR363871 63925840 63925840 1 TRUE FALSE 9107894 241474028 blood gm12878 2011-11-10T13:02:04.620 2011-11-10T13:02:06.583 2014-08-27T03:55:16.160 72 GSM830534 SRR363871.bw GIS_RnaPet_GM12878_nucleus_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "cell description: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: gen0111N", "labexpid: DHG002", "labversion: clone-based", "readtype: 2x36", "readtype description: Paired 36 nt reads", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: gen0111N", "labexpid: DHG002", "labversion: clone-based", "replicate: 1", "replicate description: tier 1") SRP009266 SRS270076 SRX105221 SRR363874 4401291 4401291 1 FALSE FALSE 483216 11357095 blood k562 2011-11-10T13:02:04.687 2011-11-10T13:02:06.583 2014-08-27T03:55:16.610 50 GSM830536 SRR363874.bw GIS_RnaPet_K562_chromatin_total c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: total", "rnaextract description: Total RNA extract (longer than 200 nt)", "biorep: gen0135CH", "labexpid: PHK001", "labversion: clone-based", "readtype: 2x36", "readtype description: Paired 36 nt reads", "cell sex: F", "localization: chromatin", "localization description: Nuclear DNA and associated proteins", "rnaextract: total", "rnaextract description: Total RNA extract (longer than 200 nt)", "biorep: gen0135CH", "labexpid: PHK001", "labversion: clone-based", "replicate: 1", "replicate description: tier 1") SRP009266 SRS270077 SRX105238 SRR363875 83171048 83171048 1 FALSE FALSE 74806992 1952930757 blood k562 2011-11-10T13:02:04.720 2011-11-10T13:02:06.583 2014-08-27T03:55:17.160 36 GSM830537 SRR363875.bw GIS_RnaPet_K562_cytosol_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: gen0138C", "labexpid: IHK009010015", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads", "cell sex: F", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: gen0138C", "labexpid: IHK009010015", "labversion: clone-free", "replicate: 1", "replicate description: tier 1") SRP009266 SRS365093 SRX188973 SRR575142 183871510 183871510 1 TRUE FALSE 148099259 3834928898 epithelium a549 2012-09-20T16:06:09.307 2012-09-20T16:06:09.307 2014-08-27T02:03:23.633 72 GSM1006902 SRR575142.bw GIS_RnaPet_A549_cell_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 087WC,088WC,087WC,088WC", "labexpid: RHA010,RHA009,RHA009,RHA010", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads", "replicate: 3,4", "localization: cell", "localization description: Whole cell", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 087WC,088WC", "labexpid: RHA009,RHA010", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads") SRP009266 SRS365093 SRX188973 SRR575143 179452316 179452316 1 TRUE FALSE 168262164 4361168469 epithelium a549 2012-09-20T16:06:09.307 2012-09-20T16:06:09.307 2014-08-27T02:03:23.633 72 GSM1006902 SRR575143.bw GIS_RnaPet_A549_cell_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 087WC,088WC,087WC,088WC", "labexpid: RHA010,RHA009,RHA009,RHA010", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads", "replicate: 3,4", "localization: cell", "localization description: Whole cell", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 087WC,088WC", "labexpid: RHA009,RHA010", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads") SRP009266 SRS365094 SRX188974 SRR575144 176360286 176360286 1 TRUE FALSE 150426418 3943418898 epithelium a549 2012-09-20T16:06:09.633 2012-09-20T16:06:09.633 2014-08-27T02:14:19.907 72 GSM1006903 SRR575144.bw GIS_RnaPet_A549_nucleus_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 087N,088N,088N,087N", "labexpid: RHA013,RHA014,RHA013,RHA014", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads", "replicate: 3,4", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 087N,088N", "labexpid: RHA013,RHA014", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads") SRP009266 SRS365094 SRX188974 SRR575145 188662314 188662314 1 TRUE FALSE 168219281 4430007074 epithelium a549 2012-09-20T16:06:09.633 2012-09-20T16:06:09.633 2014-08-27T02:14:19.907 72 GSM1006903 SRR575145.bw GIS_RnaPet_A549_nucleus_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 087N,088N,088N,087N", "labexpid: RHA013,RHA014,RHA013,RHA014", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads", "replicate: 3,4", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 087N,088N", "labexpid: RHA013,RHA014", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads") SRP009266 SRS365095 SRX188975 SRR575146 104228352 104228352 1 TRUE FALSE 94240073 2471998443 breast mcf 2012-09-20T16:06:09.727 2012-09-20T16:06:09.727 2014-08-27T01:59:17.750 72 GSM1006904 SRR575146.bw GIS_RnaPet_MCF-7_cytosol_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 089C,090C,089C,090C", "labexpid: RHM045,RHM044,RHM044,RHM045", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads", "replicate: 3,4", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 089C,090C", "labexpid: RHM044,RHM045", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads") SRP009266 SRS365095 SRX188975 SRR575147 104050852 104050852 1 TRUE FALSE 92760461 2431919913 breast mcf 2012-09-20T16:06:09.727 2012-09-20T16:06:09.727 2014-08-27T01:59:17.750 72 GSM1006904 SRR575147.bw GIS_RnaPet_MCF-7_cytosol_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 089C,090C,089C,090C", "labexpid: RHM045,RHM044,RHM044,RHM045", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads", "replicate: 3,4", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 089C,090C", "labexpid: RHM044,RHM045", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads") SRP009266 SRS365096 SRX188976 SRR575148 171729012 171729012 1 TRUE FALSE 153785549 4040306244 breast mcf 2012-09-20T16:06:09.847 2012-09-20T16:06:09.847 2014-08-27T01:59:18.163 72 GSM1006905 SRR575148.bw GIS_RnaPet_MCF-7_cell_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 089WC,090WC,089WC,090WC", "labexpid: RHM047,RHM046,RHM046,RHM047", "labversion: iIDR,clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads", "replicate: 3,4", "localization: cell", "localization description: Whole cell", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 089WC,090WC", "labexpid: RHM046,RHM047", "labversion: iIDR", "readtype: 2x36", "readtype description: Paired 36 nt reads") SRP009266 SRS365096 SRX188976 SRR575149 176364004 176364004 1 TRUE FALSE 159220820 4189611092 breast mcf 2012-09-20T16:06:09.847 2012-09-20T16:06:09.847 2014-08-27T01:59:18.163 72 GSM1006905 SRR575149.bw GIS_RnaPet_MCF-7_cell_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 089WC,090WC,089WC,090WC", "labexpid: RHM047,RHM046,RHM046,RHM047", "labversion: iIDR,clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads", "replicate: 3,4", "localization: cell", "localization description: Whole cell", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 089WC,090WC", "labexpid: RHM046,RHM047", "labversion: iIDR", "readtype: 2x36", "readtype description: Paired 36 nt reads") SRP009266 SRS365097 SRX188977 SRR575150 205659986 205659986 1 TRUE FALSE 184828424 4952627874 brain sk 2012-09-20T16:06:09.930 2012-09-20T16:06:09.930 2014-08-27T01:59:18.557 72 GSM1006906 SRR575150.bw GIS_RnaPet_SK-N-SH_nucleus_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 086N,085N,085N,086N", "labexpid: RHS020,RHS019,RHS019,RHS020", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads", "replicate: 3,4", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 085N,086N", "labexpid: RHS019,RHS020", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads") SRP009266 SRS365097 SRX188977 SRR575151 198753992 198753992 1 TRUE FALSE 175094110 4684406555 brain sk 2012-09-20T16:06:09.930 2012-09-20T16:06:09.930 2014-08-27T01:59:18.557 72 GSM1006906 SRR575151.bw GIS_RnaPet_SK-N-SH_nucleus_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 086N,085N,085N,086N", "labexpid: RHS020,RHS019,RHS019,RHS020", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads", "replicate: 3,4", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 085N,086N", "labexpid: RHS019,RHS020", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads") SRP009266 SRS365098 SRX188978 SRR575152 88420688 88420688 1 TRUE FALSE 80079415 2079383800 brain sk 2012-09-20T16:06:10.050 2012-09-20T16:06:10.050 2014-08-27T01:59:18.993 72 GSM1006907 SRR575152.bw GIS_RnaPet_SK-N-SH_cytosol_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 085C,086C,085C,086C", "labexpid: RHS017,RHS017,RHS018,RHS018", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads", "replicate: 3,4", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 085C,086C", "labexpid: RHS017,RHS018", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads") SRP009266 SRS365098 SRX188978 SRR575153 95010654 95010654 1 TRUE FALSE 85087530 2217824215 brain sh 2012-09-20T16:06:10.050 2012-09-20T16:06:10.050 2014-08-27T01:59:18.993 72 GSM1006907 SRR575153.bw GIS_RnaPet_SK-N-SH_cytosol_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 085C,086C,085C,086C", "labexpid: RHS017,RHS017,RHS018,RHS018", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads", "replicate: 3,4", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 085C,086C", "labexpid: RHS017,RHS018", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads") SRP009266 SRS365099 SRX188979 SRR575154 74730052 74730052 1 TRUE FALSE 67582964 1769328825 lung imr90 2012-09-20T16:06:10.113 2012-09-20T16:06:10.113 2014-08-27T01:59:19.583 72 GSM1006908 SRR575154.bw GIS_RnaPet_IMR90_cell_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 045WC,045WC,046WC,046WC", "labexpid: RHI001,RHI002,RHI002,RHI001", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 045WC,046WC", "labexpid: RHI001,RHI002", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads") SRP009266 SRS365099 SRX188979 SRR575155 155607416 155607416 1 TRUE FALSE 143174607 3743567720 lung imr90 2012-09-20T16:06:10.113 2012-09-20T16:06:10.113 2014-08-27T01:59:19.583 72 GSM1006908 SRR575155.bw GIS_RnaPet_IMR90_cell_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 045WC,045WC,046WC,046WC", "labexpid: RHI001,RHI002,RHI002,RHI001", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads", "replicate: 1,2", "localization: cell", "localization description: Whole cell", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 045WC,046WC", "labexpid: RHI001,RHI002", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads") SRP009266 SRS365100 SRX188980 SRR575156 185742606 185742606 1 TRUE FALSE 167848444 4363853526 epithelium a549 2012-09-20T16:06:10.197 2012-09-20T16:06:10.197 2014-08-27T01:59:19.920 72 GSM1006909 SRR575156.bw GIS_RnaPet_A549_cytosol_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 087C,087C,088C,088C", "labexpid: RHA011,RHA012,RHA011,RHA012", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads", "replicate: 3,4", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 087C,088C", "labexpid: RHA011,RHA012", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads") SRP009266 SRS365100 SRX188980 SRR575157 273861880 273861880 1 TRUE FALSE 233429639 6083733621 epithelium a549 2012-09-20T16:06:10.197 2012-09-20T16:06:10.197 2014-08-27T01:59:19.920 72 GSM1006909 SRR575157.bw GIS_RnaPet_A549_cytosol_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 087C,087C,088C,088C", "labexpid: RHA011,RHA012,RHA011,RHA012", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads", "replicate: 3,4", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 087C,088C", "labexpid: RHA011,RHA012", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads") SRP009266 SRS365101 SRX188981 SRR575158 92006664 92006664 1 TRUE FALSE 82511381 2146006598 brain sh 2012-09-20T16:06:10.257 2012-09-20T16:06:10.257 2014-08-27T03:27:34.930 72 GSM1006910 SRR575158.bw GIS_RnaPet_SK-N-SH_cell_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 086WC,085WC,086WC,085WC", "labexpid: RHS015,RHS016,RHS016,RHS015", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads", "replicate: 3,4", "localization: cell", "localization description: Whole cell", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 085WC,086WC", "labexpid: RHS015,RHS016", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads") SRP009266 SRS365101 SRX188981 SRR575159 96034578 96034578 1 TRUE FALSE 87281329 2268148423 brain sk 2012-09-20T16:06:10.257 2012-09-20T16:06:10.257 2014-08-27T03:27:34.930 72 GSM1006910 SRR575159.bw GIS_RnaPet_SK-N-SH_cell_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 086WC,085WC,086WC,085WC", "labexpid: RHS015,RHS016,RHS016,RHS015", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads", "replicate: 3,4", "localization: cell", "localization description: Whole cell", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 085WC,086WC", "labexpid: RHS015,RHS016", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads") SRP009266 SRS365102 SRX188982 SRR575160 130879536 130879536 1 TRUE FALSE 119856867 3112088299 lung imr90 2012-09-20T16:06:10.317 2012-09-20T16:06:10.317 2014-08-27T03:27:35.200 72 GSM1006911 SRR575160.bw GIS_RnaPet_IMR90_cytosol_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 045C,046C,046C,045C", "labexpid: RHI004,RHI003,RHI003,RHI004", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads", "replicate: 1,2", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 045C,046C", "labexpid: RHI003,RHI004", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads") SRP009266 SRS365102 SRX188982 SRR575161 136180876 136180876 1 TRUE FALSE 119016387 3102239216 lung imr90 2012-09-20T16:06:10.317 2012-09-20T16:06:10.317 2014-08-27T03:27:35.200 72 GSM1006911 SRR575161.bw GIS_RnaPet_IMR90_cytosol_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 045C,046C,046C,045C", "labexpid: RHI004,RHI003,RHI003,RHI004", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads", "replicate: 1,2", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 045C,046C", "labexpid: RHI003,RHI004", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads") SRP009266 SRS365103 SRX188983 SRR575162 191382544 191382544 1 TRUE FALSE 83798950 2209788112 breast mcf 2012-09-20T16:06:10.383 2012-09-20T16:06:10.383 2014-08-27T03:27:35.513 72 GSM1006912 SRR575162.bw GIS_RnaPet_MCF-7_nucleus_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 089N,090N,089N,090N", "labexpid: RHM054,RHM054,RHM055,RHM055", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads", "replicate: 3,4", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 089N,090N", "labexpid: RHM054,RHM055", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads") SRP009266 SRS365103 SRX188983 SRR575163 206612928 206612928 1 TRUE FALSE 95170726 2513806404 breast mcf 2012-09-20T16:06:10.383 2012-09-20T16:06:10.383 2014-08-27T03:27:35.513 72 GSM1006912 SRR575163.bw GIS_RnaPet_MCF-7_nucleus_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 089N,090N,089N,090N", "labexpid: RHM054,RHM054,RHM055,RHM055", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads", "replicate: 3,4", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 089N,090N", "labexpid: RHM054,RHM055", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads") SRP009266 SRS365104 SRX188984 SRR575164 155241730 155241730 1 TRUE FALSE 138796616 3667460853 lung imr90 2012-09-20T16:06:10.460 2012-09-20T16:06:10.460 2014-08-27T03:27:35.847 72 GSM1006913 SRR575164.bw GIS_RnaPet_IMR90_nucleus_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 045N,046N,045N,046N", "labexpid: RHI006,RHI005,RHI006,RHI005", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads", "replicate: 1,2", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 045N,046N", "labexpid: RHI005,RHI006", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads") SRP009266 SRS365104 SRX188984 SRR575165 160062904 160062904 1 TRUE FALSE 124783249 3276954178 lung imr90 2012-09-20T16:06:10.460 2012-09-20T16:06:10.460 2014-08-27T03:27:35.847 72 GSM1006913 SRR575165.bw GIS_RnaPet_IMR90_nucleus_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 045N,046N,045N,046N", "labexpid: RHI006,RHI005,RHI006,RHI005", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads", "replicate: 1,2", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: 045N,046N", "labexpid: RHI005,RHI006", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads") SRP009266 SRS365105 SRX188985 SRR575166 264684948 264684948 1 TRUE FALSE 123392505 3261535068 cervix s3 2012-09-20T16:06:10.527 2012-09-20T16:06:10.527 2014-08-27T03:27:36.177 72 GSM1006914 SRR575166.bw GIS_RnaPet_HeLa-S3_nucleus_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: gen0124N", "labexpid: RHH004", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads", "cell sex: F", "localization: nucleus", "localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: gen0124N", "labexpid: RHH004", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads", "replicate: 1") SRP009266 SRS365106 SRX188986 SRR575167 217224108 217224108 1 TRUE FALSE 120839115 3161880022 blood vessel huvec 2012-09-20T16:06:10.667 2012-09-20T16:06:10.667 2014-08-27T03:31:26.317 72 GSM1006915 SRR575167.bw GIS_RnaPet_HUVEC_cytosol_longPolyA c("datatype: RnaPet", "datatype description: RNA Paired-End Tags", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: gen0117C", "labexpid: RHH003", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads", "cell sex: U", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: gen0117C", "labexpid: RHH003", "labversion: clone-free", "readtype: 2x36", "readtype description: Paired 36 nt reads", "replicate: 1") SRP009266 SRS365563 SRX189691 SRR576703 87727334 87727334 1 TRUE FALSE 69816613 1808403292 blood gm12878 2012-09-26T11:06:03.680 2012-09-26T11:06:03.680 2014-08-27T03:19:43.610 72 GSM1009528 SRR576703.bw GIS_RnaPet_GM12878_cytosol_longPolyA c("lab: GIS", "lab description: Ruan - Genome Institute of Singapore", "datatype: RnaPet", "datatype description: RNA Paired-End Tag", "cell: GM12878", "cell organism: human", "cell description: lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus", "cell karyotype: normal", "cell lineage: mesoderm", "cell sex: F", "localization: cytosol", "localization description: The fluid between the cells outer membrane and the nucleus", "rnaextract: longPolyA", "rnaextract description: Poly(A)+ RNA longer than 200 nt", "biorep: gen0107C", "labexpid: IHG024", "labversion: clone-free", "replicate: 1", "replicate description: tier 1")