project	sample	experiment	run	read_count_as_reported_by_sra	reads_downloaded	proportion_of_reads_reported_by_sra_downloaded	paired_end	sra_misreported_paired_end	mapped_read_count	auc	sharq_beta_tissue	sharq_beta_cell_type	biosample_submission_date	biosample_publication_date	biosample_update_date	avg_read_length	geo_accession	bigwig_file	title	characteristics
SRP017435	SRS378412	SRX208533	SRR628721	6073709	6073709	1	FALSE	FALSE	5408095	215010666	melanoma	sk	2012-12-04T18:05:06.853	2014-04-21T01:06:31.190	2014-04-21T01:11:15.300	40	GSM1048945	SRR628721.bw	SK-Mel-28 shControl rep1	c("cell line: SK-Mel-28", "time point: post infection day 3", "treatment: shRNA scramble (pLKO backbone, sigma)")
SRP017435	SRS378413	SRX208534	SRR628722	5506540	5506540	1	FALSE	FALSE	4617949	183273126	melanoma	sk	2012-12-04T18:05:07.510	2014-04-21T01:07:13.583	2014-04-21T01:11:15.637	40	GSM1048946	SRR628722.bw	SK-Mel-28 shControl rep2	c("cell line: SK-Mel-28", "time point: post infection day 3", "treatment: shRNA scramble (pLKO backbone, sigma)")
SRP017435	SRS378414	SRX208535	SRR628723	5697124	5697124	1	FALSE	FALSE	4914327	194843415	melanoma	sk	2012-12-04T18:05:07.567	2014-04-21T01:07:19.710	2014-04-21T01:11:15.980	40	GSM1048947	SRR628723.bw	SK-Mel-28 shControl rep3	c("cell line: SK-Mel-28", "time point: post infection day 3", "treatment: shRNA scramble (pLKO backbone, sigma)")
SRP017435	SRS378415	SRX208536	SRR628724	7007212	7007212	1	FALSE	FALSE	6307652	250495569	melanoma	sk	2012-12-04T18:05:07.673	2014-04-21T01:07:17.703	2014-04-21T01:11:16.357	40	GSM1048948	SRR628724.bw	SK-Mel-28 shRAB7 rep1	c("cell line: SK-Mel-28", "time point: post infection day 3", "treatment: shRNA RAB7 (pLKO backbone, sigma, GATTGACCTCGAAA)")
SRP017435	SRS378416	SRX208537	SRR628725	7386775	7386775	1	FALSE	FALSE	6321210	250756676	melanoma	sk	2012-12-04T18:05:07.727	2014-04-21T01:07:15.673	2014-04-21T01:11:16.657	40	GSM1048949	SRR628725.bw	SK-Mel-28 shRAB7 rep2	c("cell line: SK-Mel-28", "time point: post infection day 3", "treatment: shRNA RAB7 (pLKO backbone, sigma, GATTGACCTCGAAA)")
SRP017435	SRS378417	SRX208538	SRR628726	6177584	6177584	1	FALSE	FALSE	5310938	210557202	melanoma	sk	2012-12-04T18:05:07.780	2014-04-21T01:07:28.290	2014-04-21T01:11:17.037	40	GSM1048950	SRR628726.bw	SK-Mel-28 shRAB7 rep3	c("cell line: SK-Mel-28", "time point: post infection day 3", "treatment: shRNA RAB7 (pLKO backbone, sigma, GATTGACCTCGAAA)")
SRP017435	SRS378418	SRX208539	SRR628727	7127913	7127913	1	FALSE	FALSE	6416311	254786319	melanoma	hct	2012-12-04T18:05:07.863	2014-04-21T01:07:26.257	2014-04-21T01:11:17.357	40	GSM1048951	SRR628727.bw	UACC-62 shControl rep1	c("cell line: UACC-62", "time point: post infection day 3", "treatment: shRNA scramble (pLKO backbone, sigma)")
SRP017435	SRS378419	SRX208540	SRR628728	6901109	6901109	1	FALSE	FALSE	6118002	242852846	melanoma	hct	2012-12-04T18:05:07.943	2014-04-21T01:07:35.553	2014-04-21T01:12:12.937	40	GSM1048952	SRR628728.bw	UACC-62 shControl rep2	c("cell line: UACC-62", "time point: post infection day 3", "treatment: shRNA scramble (pLKO backbone, sigma)")
SRP017435	SRS378420	SRX208541	SRR628729	7698900	7698900	1	FALSE	FALSE	6703486	265958262	melanoma	hct	2012-12-04T18:05:08.003	2014-04-21T01:07:30.257	2014-04-21T01:12:13.220	40	GSM1048953	SRR628729.bw	UACC-62 shControl rep3	c("cell line: UACC-62", "time point: post infection day 3", "treatment: shRNA scramble (pLKO backbone, sigma)")
SRP017435	SRS378421	SRX208542	SRR628730	5848572	5848572	1	FALSE	FALSE	5235638	207764047	melanoma	hct	2012-12-04T18:05:08.087	2014-04-21T01:07:21.893	2014-04-21T01:12:13.487	40	GSM1048954	SRR628730.bw	UACC-62 shRAB7 rep1	c("cell line: UACC-62", "time point: post infection day 3", "treatment: shRNA RAB7 (pLKO backbone, sigma, GATTGACCTCGAAA)")
SRP017435	SRS378422	SRX208543	SRR628731	6694375	6694375	1	FALSE	FALSE	5849632	231988452	melanoma	hct	2012-12-04T18:05:08.163	2014-04-21T01:07:38.857	2014-04-21T01:12:13.790	40	GSM1048955	SRR628731.bw	UACC-62 shRAB7 rep2	c("cell line: UACC-62", "time point: post infection day 3", "treatment: shRNA RAB7 (pLKO backbone, sigma, GATTGACCTCGAAA)")
SRP017435	SRS378423	SRX208544	SRR628732	4828007	4828007	1	FALSE	FALSE	4249083	168567983	melanoma	hct	2012-12-04T18:05:08.220	2014-04-21T01:07:32.290	2014-04-21T01:12:14.063	40	GSM1048956	SRR628732.bw	UACC-62 shRAB7 rep3	c("cell line: UACC-62", "time point: post infection day 3", "treatment: shRNA RAB7 (pLKO backbone, sigma, GATTGACCTCGAAA)")
SRP017435	SRS378424	SRX208545	SRR628733	7855750	7855750	1	FALSE	FALSE	7383022	293508493	colon	hct	2012-12-04T18:05:08.277	2014-04-21T01:07:24.093	2014-04-21T01:12:14.337	40	GSM1048957	SRR628733.bw	HCT-116 shControl rep1	c("cell line: HCT-116", "time point: post infection day 3", "treatment: shRNA scramble (pLKO backbone, sigma)")
SRP017435	SRS378425	SRX208546	SRR628734	6102920	6102920	1	FALSE	FALSE	5653807	224735657	colon	hct	2012-12-04T18:05:08.363	2014-04-21T01:07:44.533	2014-04-21T01:12:14.610	40	GSM1048958	SRR628734.bw	HCT-116 shControl rep2	c("cell line: HCT-116", "time point: post infection day 3", "treatment: shRNA scramble (pLKO backbone, sigma)")
SRP017435	SRS378426	SRX208547	SRR628735	5190552	5190552	1	FALSE	FALSE	4896952	194781894	colon	hct	2012-12-04T18:05:08.420	2014-04-21T01:07:41.753	2014-04-21T01:12:14.883	40	GSM1048959	SRR628735.bw	HCT-116 shControl rep3	c("cell line: HCT-116", "time point: post infection day 3", "treatment: shRNA scramble (pLKO backbone, sigma)")
SRP017435	SRS378427	SRX208548	SRR628736	8773551	8773551	1	FALSE	FALSE	8287837	329635634	colon	hct	2012-12-04T18:05:08.507	2014-04-21T01:07:54.147	2014-04-21T01:12:15.187	40	GSM1048960	SRR628736.bw	HCT-116 shRAB7 rep1	c("cell line: HCT-116", "time point: post infection day 3", "treatment: shRNA RAB7 (pLKO backbone, sigma, GATTGACCTCGAAA)")
SRP017435	SRS378428	SRX208549	SRR628737	5850208	5850208	1	FALSE	FALSE	5435436	216077407	colon	hct	2012-12-04T18:05:08.560	2014-04-21T01:07:48.060	2014-04-21T01:12:15.460	40	GSM1048961	SRR628737.bw	HCT-116 shRAB7 rep2	c("cell line: HCT-116", "time point: post infection day 3", "treatment: shRNA RAB7 (pLKO backbone, sigma, GATTGACCTCGAAA)")
SRP017435	SRS378429	SRX208550	SRR628738	7079931	7079931	1	FALSE	FALSE	6689262	266058598	colon	hct	2012-12-04T18:05:08.637	2014-04-21T01:07:51.730	2014-04-21T01:12:15.750	40	GSM1048962	SRR628738.bw	HCT-116 shRAB7 rep3	c("cell line: HCT-116", "time point: post infection day 3", "treatment: shRNA RAB7 (pLKO backbone, sigma, GATTGACCTCGAAA)")