project sample experiment run read_count_as_reported_by_sra reads_downloaded proportion_of_reads_reported_by_sra_downloaded paired_end sra_misreported_paired_end mapped_read_count auc sharq_beta_tissue sharq_beta_cell_type biosample_submission_date biosample_publication_date biosample_update_date avg_read_length geo_accession bigwig_file title characteristics SRP022876 SRS424515 SRX282059 SRR857236 60118946 60118946 1 TRUE FALSE 59135593 5911033743 stem cell esc 2013-05-17T10:50:07.940 2014-05-13T00:44:25.527 2014-05-13T01:49:18.133 202 GSM1143923 SRR857236.bw KYSE70 shSOX2(2) Day 0 c("cell line: KYSE70", "cell type: human esophageal squamous carcinoma cells", "genotype/variation: stably expressing pLKO-Tet-On-shSOX2", "treated with: none") SRP022876 SRS424516 SRX282060 SRR857237 47025110 47025110 1 TRUE FALSE 45796160 4564496279 stem cell esc 2013-05-17T10:50:09.210 2014-05-13T00:44:25.633 2014-05-13T01:49:18.500 202 GSM1143924 SRR857237.bw KYSE70 shSOX2(2) Day 4 c("cell line: KYSE70", "cell type: human esophageal squamous carcinoma cells", "genotype/variation: stably expressing pLKO-Tet-On-shSOX2", "treated with: 50ng/ml of doxycyline for 4 days") SRP022876 SRS424517 SRX282061 SRR857238 48067612 48067612 1 TRUE FALSE 46917066 4662702356 stem cell esc 2013-05-17T10:50:10.213 2014-05-13T00:44:25.677 2014-05-13T01:49:18.803 202 GSM1143925 SRR857238.bw KYSE70 shSOX2(1) Day 4 c("cell line: KYSE70", "cell type: human esophageal squamous carcinoma cells", "genotype/variation: stably expressing pLKO-Tet-On-shSOX2", "treated with: 50ng/ml of doxycyline for 4 days") SRP022876 SRS424518 SRX282062 SRR857239 7196136 7196136 1 TRUE FALSE 7047583 703070793 stem cell esc 2013-05-17T10:50:11.290 2014-05-13T00:44:25.720 2014-05-13T01:49:19.100 202 GSM1143926 SRR857239.bw KYSE70 shTP63(2) Day 0 c("cell line: KYSE70", "cell type: human esophageal squamous carcinoma cells", "genotype/variation: stably expressing pLKO-Tet-On-shTP63", "treated with: none") SRP022876 SRS424519 SRX282063 SRR857240 69215020 69215020 1 TRUE FALSE 68361646 6844126320 stem cell esc 2013-05-17T10:50:12.357 2014-05-13T00:44:25.753 2014-05-13T01:49:19.370 202 GSM1143927 SRR857240.bw KYSE70 shTP63(2) Day 4 c("cell line: KYSE70", "cell type: human esophageal squamous carcinoma cells", "genotype/variation: stably expressing pLKO-Tet-On-shTP63", "treated with: 50ng/ml of doxycyline for 4 days") SRP022876 SRS424520 SRX282064 SRR857241 36347688 36347688 1 TRUE FALSE 35603709 3548996412 stem cell esc 2013-05-17T10:50:13.360 2014-05-13T00:44:25.790 2014-05-13T01:49:19.650 202 GSM1143928 SRR857241.bw KYSE70 shTP63(1) Day 4 c("cell line: KYSE70", "cell type: human esophageal squamous carcinoma cells", "genotype/variation: stably expressing pLKO-Tet-On-shTP63", "treated with: 50ng/ml of doxycyline for 4 days")