project sample experiment run read_count_as_reported_by_sra reads_downloaded proportion_of_reads_reported_by_sra_downloaded paired_end sra_misreported_paired_end mapped_read_count auc sharq_beta_tissue sharq_beta_cell_type biosample_submission_date biosample_publication_date biosample_update_date avg_read_length geo_accession bigwig_file title characteristics SRP023270 SRS429979 SRX287272 SRR869302 218299072 218299072 1 TRUE FALSE 210565153 10439311339 lung imr90 2013-05-29T15:07:21.073 2013-08-13T01:21:24.710 2014-03-07T14:15:52.591 100 GSM1151048 SRR869302.bw IMR90_GA2064_RNAseq c("cell line: IMR90", "genotype/variation: wild type") SRP023270 SRS429980 SRX287275 SRR869305 144091678 144091678 1 TRUE FALSE 133965862 6705456820 colon hct 2013-05-29T15:07:56.450 2013-08-13T01:21:07.327 2014-03-07T14:15:52.723 102 GSM1151051 SRR869305.bw HCT116_DKO_GA2067_RNAseq c("cell line: HCT116", "genotype/variation: expressing hypomorphic DNMT1 and lack DNMT3b (HCT116-DKO)") SRP023270 SRS429981 SRX287274 SRR869304 143289302 143289302 1 TRUE FALSE 136421916 6838094542 colon hct 2013-05-29T15:07:54.597 2013-08-13T01:21:06.243 2014-03-07T14:15:52.690 102 GSM1151050 SRR869304.bw HCT116_GA2066_RNAseq c("cell line: HCT116", "genotype/variation: wild type") SRP023270 SRS429982 SRX287273 SRR869303 243424622 243424622 1 TRUE FALSE 231078233 11450846543 lung imr90 2013-05-29T15:07:44.800 2013-08-13T01:21:04.040 2014-03-07T14:15:52.645 100 GSM1151049 SRR869303.bw IMR90_Aza_GA2065_RNAseq c("cell line: IMR90", "genotype/variation: wild type", "treated with: 20 μM 5azadC for 72 hrs") SRP023270 SRS429983 SRX287276 SRR869306 245886620 245886620 1 TRUE FALSE 160786446 7947196411 lung imr90 2013-05-29T15:07:57.683 2013-08-13T01:20:43.867 2014-03-07T14:15:52.764 102 GSM1151052 SRR869306.bw IMR90_shLuc_GA2348_RNAseq c("cell line: IMR90", "infected with: negative control shRNA-luciferase (shLuc) construct") SRP023270 SRS429984 SRX287277 SRR869307 243766296 243766296 1 TRUE FALSE 214486505 10565991393 lung imr90 2013-05-29T15:08:00.767 2013-08-13T01:11:16.573 2014-03-07T14:15:52.800 102 GSM1151053 SRR869307.bw IMR90_shMeCP2_GA2349_RNAseq c("cell line: IMR90", "infected with: shRNA-MeCP2 construct") SRP023270 SRS429985 SRX287278 SRR869308 605145648 605145648 1 TRUE FALSE 540123027 26163038395 colon hct 2013-05-29T15:08:03.633 2013-08-13T01:11:19.307 2014-03-07T14:15:52.843 100 GSM1151054 SRR869308.bw HCT116_shLuc_GA3255_RNAseq c("cell line: HCT116", "infected with: negative control shRNA-luciferase (shLuc) construct") SRP023270 SRS429986 SRX287279 SRR869309 323566566 323566566 1 TRUE FALSE 283499409 13614312078 colon hct 2013-05-29T15:08:04.843 2013-08-13T01:11:21.900 2014-03-07T14:15:52.876 100 GSM1151055 SRR869309.bw HCT116_shMeCP2_GA3256_RNAseq c("cell line: HCT116", "infected with: shRNA-MeCP2 construct") SRP023270 SRS429987 SRX287280 SRR869310 324474222 324474222 1 TRUE FALSE 284829320 13683073944 lung imr90 2013-05-29T15:08:08.853 2013-08-13T01:11:27.993 2014-03-07T14:15:52.912 100 GSM1151056 SRR869310.bw IMR90_GA3259_RNAseq c("cell line: IMR90", "genotype/variation: wild type") SRP023270 SRS429988 SRX287281 SRR869311 349707434 349707434 1 TRUE FALSE 273890895 13208326140 lung imr90 2013-05-29T15:08:10.683 2013-08-13T01:11:24.267 2014-03-07T14:15:52.945 100 GSM1151057 SRR869311.bw IMR90_6hr_TSA_GA3263_RNAseq c("cell line: IMR90", "genotype/variation: wild type", "treated with: 300nM TSA for 6 hrs") SRP023270 SRS429989 SRX287282 SRR869312 457746744 457746744 1 TRUE FALSE 379011886 17374433250 colon hct 2013-05-29T15:08:12.197 2013-08-13T01:11:26.767 2014-03-07T14:15:52.983 100 GSM1151058 SRR869312.bw HCT116_GA3814_RNAseq c("cell line: HCT116", "genotype/variation: wild type") SRP023270 SRS429990 SRX287283 SRR869313 293887506 293887506 1 TRUE FALSE 207281150 9321704296 colon hct 2013-05-29T15:08:14.647 2013-08-13T01:11:30.347 2014-03-07T14:15:53.019 100 GSM1151059 SRR869313.bw HCT116_6hr_TSA_GA3816_RNAseq c("cell line: HCT116", "genotype/variation: wild type", "treated with: 300nM TSA for 6 hrs")