project sample experiment run read_count_as_reported_by_sra reads_downloaded proportion_of_reads_reported_by_sra_downloaded paired_end sra_misreported_paired_end mapped_read_count auc sharq_beta_tissue sharq_beta_cell_type biosample_submission_date biosample_publication_date biosample_update_date avg_read_length geo_accession bigwig_file title characteristics SRP028301 SRS464841 SRX328701 SRR944282 20877558 20877558 1 FALSE FALSE 18186472 732971752 kidney hek 2013-07-29T15:30:50.743 2013-09-01T01:13:44.027 2014-03-07T15:15:12.882 43 GSM1197324 SRR944282.bw HEK_100 c("cell line: HEK293T", "library prep protocol: SMART-Seq2 (variant 2)") SRP028301 SRS464842 SRX328702 SRR944283 29726267 29726267 1 FALSE FALSE 25199900 988637122 kidney hek 2013-07-29T15:31:33.760 2013-09-01T01:13:37.777 2014-03-07T15:15:13.087 43 GSM1197325 SRR944283.bw HEK_101 c("cell line: HEK293T", "library prep protocol: SMART-Seq2 (variant 1)") SRP028301 SRS464843 SRX328703 SRR944284 25531423 25531423 1 FALSE FALSE 21441787 852976940 kidney hek 2013-07-29T15:32:00.473 2013-09-01T01:13:41.987 2014-03-07T15:15:13.751 43 GSM1197326 SRR944284.bw HEK_102 c("cell line: HEK293T", "library prep protocol: SMART-Seq2 (variant 1)") SRP028301 SRS464844 SRX328704 SRR944285 21609578 21609578 1 FALSE FALSE 18035177 721584842 kidney hek 2013-07-29T15:30:54.027 2013-09-01T01:13:46.010 2014-03-07T15:15:12.919 43 GSM1197327 SRR944285.bw HEK_103 c("cell line: HEK293T", "library prep protocol: SMART-Seq2 (variant 1)") SRP028301 SRS464846 SRX328707 SRR944288 33650915 33650915 1 FALSE FALSE 29571317 1174390214 kidney hek 2013-07-29T15:31:18.103 2013-09-01T01:13:54.013 2014-03-07T15:15:12.977 43 GSM1197330 SRR944288.bw HEK_108 c("cell line: HEK293T", "library prep protocol: SMART-Seq2 (variant 1)") SRP028301 SRS464847 SRX328706 SRR944287 37965547 37965547 1 FALSE FALSE 34070546 1366540815 kidney hek 2013-07-29T15:31:50.243 2013-09-01T01:13:48.040 2014-03-07T15:15:13.473 43 GSM1197329 SRR944287.bw HEK_107 c("cell line: HEK293T", "library prep protocol: SMART-Seq2 (variant 1)") SRP028301 SRS464848 SRX328708 SRR944289 29383907 29383907 1 FALSE FALSE 28084156 1140604743 kidney hek 2013-07-29T15:31:41.473 2013-09-01T01:13:50.020 2014-03-07T15:15:13.202 43 GSM1197331 SRR944289.bw HEK_113 c("cell line: HEK293T", "library prep protocol: SMART-Seq2 (variant 1)") SRP028301 SRS464849 SRX328709 SRR944290 37204949 37204949 1 FALSE FALSE 34847202 1405959449 kidney hek 2013-07-29T15:31:53.913 2013-09-01T01:14:00.320 2014-03-07T15:15:13.513 43 GSM1197332 SRR944290.bw HEK_114 c("cell line: HEK293T", "library prep protocol: SMART-Seq2 (variant 1)") SRP028301 SRS464850 SRX328710 SRR944291 18903881 18903881 1 FALSE FALSE 17945157 746774486 kidney hek 2013-07-29T15:31:19.143 2013-09-01T01:13:56.223 2014-03-07T15:15:13.021 43 GSM1197333 SRR944291.bw HEK_120 c("cell line: HEK293T", "library prep protocol: SMART-Seq2 (variant 2)") SRP028301 SRS464851 SRX328711 SRR944292 21251429 21251429 1 FALSE FALSE 16278320 659034773 kidney hek 2013-07-29T15:31:44.233 2013-09-01T01:14:01.490 2014-03-07T15:15:13.287 43 GSM1197334 SRR944292.bw HEK_122 c("cell line: HEK293T", "library prep protocol: SMART-Seq2 (variant 2)") SRP028301 SRS464852 SRX328712 SRR944293 34568792 34568792 1 FALSE FALSE 30304202 1215119649 kidney hek 2013-07-29T15:31:55.087 2013-09-01T01:13:58.240 2014-03-07T15:15:13.582 43 GSM1197335 SRR944293.bw HEK_123 c("cell line: HEK293T", "library prep protocol: SMART-Seq2 (variant 2)") SRP028301 SRS464853 SRX328713 SRR944294 22226544 22226544 1 FALSE FALSE 20391062 829145006 kidney hek 2013-07-29T15:31:32.647 2013-09-01T01:14:02.570 2014-03-07T15:15:13.053 43 GSM1197336 SRR944294.bw HEK_124 c("cell line: HEK293T", "library prep protocol: SMART-Seq2 (variant 2)") SRP028301 SRS464854 SRX328714 SRR944295 20895319 20895319 1 FALSE FALSE 19913360 826088634 kidney hek 2013-07-29T15:31:45.623 2013-09-01T01:14:06.477 2014-03-07T15:15:13.339 43 GSM1197337 SRR944295.bw HEK_35 c("cell line: HEK293T", "library prep protocol: SMART-Seq2 (variant 3)") SRP028301 SRS464855 SRX328715 SRR944296 41631928 41631928 1 FALSE FALSE 37163519 1546305843 kidney hek 2013-07-29T15:31:56.207 2013-09-01T01:12:23.327 2014-03-07T15:15:13.633 43 GSM1197338 SRR944296.bw HEK_38 c("cell line: HEK293T", "library prep protocol: SMART-Seq2 (variant 3)") SRP028301 SRS464856 SRX328716 SRR944297 53895215 53895215 1 FALSE FALSE 42270656 1761220259 kidney hek 2013-07-29T15:31:39.907 2013-09-01T01:12:25.330 2014-03-07T15:15:13.163 43 GSM1197339 SRR944297.bw HEK_39 c("cell line: HEK293T", "library prep protocol: SMART-Seq2 (variant 3)") SRP028301 SRS464857 SRX328717 SRR944298 49777940 49777940 1 FALSE FALSE 47438214 1984887388 kidney hek 2013-07-29T15:31:43.057 2013-09-01T01:12:40.047 2014-03-07T15:15:13.232 43 GSM1197340 SRR944298.bw HEK_40 c("cell line: HEK293T", "library prep protocol: SMART-Seq2 (variant 3)") SRP028301 SRS464858 SRX328718 SRR944299 32028481 32028481 1 FALSE FALSE 27798456 1115499154 kidney hek 2013-07-29T15:31:58.910 2013-09-01T01:12:26.917 2014-03-07T15:15:13.719 43 GSM1197341 SRR944299.bw HEK_55 c("cell line: HEK293T", "library prep protocol: SMART-Seq2 (variant 4)") SRP028301 SRS464859 SRX328719 SRR944300 30037254 30037254 1 FALSE FALSE 24034702 953617527 kidney hek 2013-07-29T15:31:46.837 2013-09-01T01:12:33.257 2014-03-07T15:15:13.375 43 GSM1197342 SRR944300.bw HEK_56 c("cell line: HEK293T", "library prep protocol: SMART-Seq2 (variant 4)") SRP028301 SRS464860 SRX328720 SRR944301 40450585 40450585 1 FALSE FALSE 34839011 1422213725 kidney hek 2013-07-29T15:31:47.890 2013-09-01T01:12:28.957 2014-03-07T15:15:13.406 43 GSM1197343 SRR944301.bw HEK_57 c("cell line: HEK293T", "library prep protocol: SMART-Seq2") SRP028301 SRS464861 SRX328721 SRR944302 17543817 17543817 1 FALSE FALSE 13190965 522503775 kidney hek 2013-07-29T15:32:17.133 2013-09-01T01:14:56.823 2014-03-07T15:15:13.874 43 GSM1197344 SRR944302.bw HEK_58 c("cell line: HEK293T", "library prep protocol: SMART-Seq2") SRP028301 SRS464862 SRX328722 SRR944303 21930970 21930970 1 FALSE FALSE 18628337 737988096 kidney hek 2013-07-29T15:31:49.100 2013-09-01T01:14:45.570 2014-03-07T15:15:13.441 43 GSM1197345 SRR944303.bw HEK_62 c("cell line: HEK293T", "library prep protocol: SMART-Seq2 (variant 3)") SRP028301 SRS464863 SRX328723 SRR944304 27234975 27234975 1 FALSE FALSE 24693163 997069316 kidney hek 2013-07-29T15:31:57.507 2013-09-01T01:14:58.930 2014-03-07T15:15:13.666 43 GSM1197346 SRR944304.bw HEK_63 c("cell line: HEK293T", "library prep protocol: SMART-Seq2 (variant 4)") SRP028301 SRS464864 SRX328724 SRR944305 28840793 28840793 1 FALSE FALSE 26380095 1061047648 kidney hek 2013-07-29T15:32:33.137 2013-09-01T01:14:39.380 2014-03-07T15:15:13.914 43 GSM1197347 SRR944305.bw HEK_64 c("cell line: HEK293T", "library prep protocol: SMART-Seq2 (variant 4)") SRP028301 SRS464865 SRX328725 SRR944306 34679384 34679384 1 FALSE FALSE 32352187 1313677465 kidney hek 2013-07-29T15:32:16.103 2013-09-01T01:15:05.837 2014-03-07T15:15:13.834 43 GSM1197348 SRR944306.bw HEK_65 c("cell line: HEK293T", "library prep protocol: SMART-Seq2 (variant 4)") SRP028301 SRS464866 SRX328726 SRR944307 32591681 32591681 1 FALSE FALSE 30809853 1258240112 kidney hek 2013-07-29T15:32:35.077 2013-09-01T01:14:52.783 2014-03-07T15:15:13.952 43 GSM1197349 SRR944307.bw HEK_66 c("cell line: HEK293T", "library prep protocol: SMART-Seq2 (variant 4)") SRP028301 SRS464867 SRX328727 SRR944308 32399901 32399901 1 FALSE FALSE 29079290 1179650340 kidney hek 2013-07-29T15:32:36.440 2013-09-01T01:15:08.060 2014-03-07T15:15:14.017 43 GSM1197350 SRR944308.bw HEK_67 c("cell line: HEK293T", "library prep protocol: SMART-Seq2") SRP028301 SRS464868 SRX328728 SRR944309 32001134 32001134 1 FALSE FALSE 28691588 1170466078 kidney hek 2013-07-29T15:32:37.563 2013-09-01T01:14:48.687 2014-03-07T15:15:14.048 43 GSM1197351 SRR944309.bw HEK_69 c("cell line: HEK293T", "library prep protocol: SMART-Seq2") SRP028301 SRS464869 SRX328729 SRR944310 33190261 33190261 1 FALSE FALSE 28458087 1154016498 kidney hek 2013-07-29T15:32:38.697 2013-09-01T01:15:10.077 2014-03-07T15:15:14.083 43 GSM1197352 SRR944310.bw HEK_70 c("cell line: HEK293T", "library prep protocol: SMART-Seq2") SRP028301 SRS464870 SRX328730 SRR944311 19313245 19313245 1 FALSE FALSE 15219527 626592244 kidney hek 2013-07-29T15:32:42.937 2013-09-01T01:13:08.867 2014-03-07T15:15:14.118 43 GSM1197353 SRR944311.bw HEK_79 c("cell line: HEK293T", "library prep protocol: SMART-Seq2 (variant 3)") SRP028301 SRS464871 SRX328731 SRR944312 21768635 21768635 1 FALSE FALSE 18726333 761897310 kidney hek 2013-07-29T15:32:01.613 2013-09-01T01:13:15.287 2014-03-07T15:15:13.786 43 GSM1197354 SRR944312.bw HEK_82 c("cell line: HEK293T", "library prep protocol: SMART-Seq2") SRP028301 SRS464872 SRX328732 SRR944313 31644194 31644194 1 FALSE FALSE 27074617 1104821918 kidney hek 2013-07-29T15:33:22.740 2013-09-01T01:13:10.937 2014-03-07T15:15:14.278 43 GSM1197355 SRR944313.bw HEK_84 c("cell line: HEK293T", "library prep protocol: SMART-Seq2") SRP028301 SRS464873 SRX328734 SRR944315 24355901 24355901 1 FALSE FALSE 22013439 888298315 kidney hek 2013-07-29T15:32:51.137 2013-09-01T01:13:18.690 2014-03-07T15:15:14.152 43 GSM1197357 SRR944315.bw HEK_98 c("cell line: HEK293T", "library prep protocol: SMART-Seq2 (variant 2)") SRP028301 SRS464874 SRX328733 SRR944314 17192714 17192714 1 FALSE FALSE 14745167 584232195 kidney hek 2013-07-29T15:33:54.083 2013-09-01T01:13:16.510 2014-03-07T15:15:14.434 43 GSM1197356 SRR944314.bw HEK_97 c("cell line: HEK293T", "library prep protocol: SMART-Seq2 (variant 2)") SRP028301 SRS464875 SRX328735 SRR944316 21648455 21648455 1 FALSE FALSE 18680678 748780869 kidney hek 2013-07-29T15:33:21.507 2013-09-01T01:13:17.583 2014-03-07T15:15:14.227 43 GSM1197358 SRR944316.bw HEK_99 c("cell line: HEK293T", "library prep protocol: SMART-Seq2 (variant 2)") SRP028301 SRS464876 SRX328736 SRR944317 30924985 30924985 1 FALSE FALSE 27455828 1132267922 kidney hek 2013-07-29T15:33:25.670 2013-09-01T01:13:27.447 2014-03-07T15:15:14.383 43 GSM1197359 SRR944317.bw HEK_SMRT_1 c("cell line: HEK293T", "library prep protocol: standard SMART-Seq") SRP028301 SRS464877 SRX328737 SRR944318 31138863 31138863 1 FALSE FALSE 25971795 1072574731 kidney hek 2013-07-29T15:33:05.460 2013-09-01T01:13:19.727 2014-03-07T15:15:14.185 43 GSM1197360 SRR944318.bw HEK_SMRT_3 c("cell line: HEK293T", "library prep protocol: standard SMART-Seq") SRP028301 SRS464878 SRX328738 SRR944319 42540053 42540053 1 FALSE FALSE 41826346 1734445776 kidney hek 2013-07-29T15:33:24.160 2013-09-01T01:13:25.470 2014-03-07T15:15:14.334 43 GSM1197361 SRR944319.bw HEK_SMRT_5 c("cell line: HEK293T", "library prep protocol: standard SMART-Seq") SRP028301 SRS464879 SRX328739 SRR944320 38501001 38501001 1 FALSE FALSE 37586659 1557848430 kidney hek 2013-07-29T15:43:51.313 2013-09-01T01:13:21.420 2014-03-07T15:15:15.131 43 GSM1197362 SRR944320.bw HEK_SMRT_6 c("cell line: HEK293T", "library prep protocol: standard SMART-Seq") SRP028301 SRS464880 SRX328740 SRR944321 6191996 6191996 1 FALSE FALSE 6091411 259472887 kidney hek 2013-07-29T15:43:21.040 2013-09-01T01:13:23.547 2014-03-07T15:15:14.979 43 GSM1197363 SRR944321.bw ds_HEK_1ng_1 c("cell line: HEK293T", "library prep protocol: SMART-Seq2") SRP028301 SRS464881 SRX328741 SRR944322 4701455 4701455 1 FALSE FALSE 4626561 196974815 kidney hek 2013-07-29T15:43:23.280 2013-09-01T01:13:31.553 2014-03-07T15:15:15.041 43 GSM1197364 SRR944322.bw ds_HEK_1ng_2 c("cell line: HEK293T", "library prep protocol: SMART-Seq2") SRP028301 SRS464882 SRX328742 SRR944323 5248368 5248368 1 FALSE FALSE 5158713 219664904 kidney hek 2013-07-29T15:43:24.437 2013-09-01T01:13:35.733 2014-03-07T15:15:15.071 43 GSM1197365 SRR944323.bw ds_HEK_1ng_3 c("cell line: HEK293T", "library prep protocol: SMART-Seq2") SRP028301 SRS464883 SRX328743 SRR944324 6855787 6855787 1 FALSE FALSE 6629832 281943508 kidney hek 2013-07-29T15:43:22.117 2013-09-01T01:13:29.520 2014-03-07T15:15:15.012 43 GSM1197366 SRR944324.bw ds_HEK_100pg_1 c("cell line: HEK293T", "library prep protocol: SMART-Seq2") SRP028301 SRS464884 SRX328744 SRR944325 6161970 6161970 1 FALSE FALSE 5910352 251590071 kidney hek 2013-07-29T15:43:55.177 2013-09-01T01:13:33.530 2014-03-07T15:15:15.225 43 GSM1197367 SRR944325.bw ds_HEK_100pg_3 c("cell line: HEK293T", "library prep protocol: SMART-Seq2") SRP028301 SRS464885 SRX328745 SRR944326 6973253 6973253 1 FALSE FALSE 6740506 287204993 kidney hek 2013-07-29T15:44:03.037 2013-09-01T01:13:39.993 2014-03-07T15:15:15.257 43 GSM1197368 SRR944326.bw ds_HEK_100pg_4 c("cell line: HEK293T", "library prep protocol: SMART-Seq2") SRP028301 SRS464886 SRX328746 SRR944327 3911781 3911781 1 FALSE FALSE 3230939 135860566 kidney hek 2013-07-29T15:43:52.503 2013-09-01T01:11:47.870 2014-03-07T15:15:15.160 43 GSM1197369 SRR944327.bw ds_HEK_10pg_1 c("cell line: HEK293T", "library prep protocol: SMART-Seq2") SRP028301 SRS464887 SRX328747 SRR944328 4944344 4944344 1 FALSE FALSE 4033024 169252592 kidney hek 2013-07-29T15:44:17.450 2013-09-01T01:11:43.707 2014-03-07T15:15:15.288 43 GSM1197370 SRR944328.bw ds_HEK_10pg_2 c("cell line: HEK293T", "library prep protocol: SMART-Seq2") SRP028301 SRS464888 SRX328748 SRR944329 8925567 8925567 1 FALSE FALSE 8775350 370618692 kidney hek 2013-07-29T15:44:18.823 2013-09-01T01:11:52.003 2014-03-07T15:15:15.321 43 GSM1197371 SRR944329.bw HEK100cells_1 c("cell line: HEK293T", "library prep protocol: SMART-Seq2") SRP028301 SRS464889 SRX328749 SRR944330 6667652 6667652 1 FALSE FALSE 6546775 276396403 kidney hek 2013-07-29T15:43:53.710 2013-09-01T01:11:41.863 2014-03-07T15:15:15.191 43 GSM1197372 SRR944330.bw HEK100cells_2 c("cell line: HEK293T", "library prep protocol: SMART-Seq2") SRP028301 SRS464890 SRX328750 SRR944331 9786100 9786100 1 FALSE FALSE 9678178 410334020 kidney hek 2013-07-29T15:44:42.330 2013-09-01T01:11:56.417 2014-03-07T15:15:15.485 43 GSM1197373 SRR944331.bw HEK100cells_3 c("cell line: HEK293T", "library prep protocol: SMART-Seq2") SRP028301 SRS464891 SRX328751 SRR944332 5987809 5987809 1 FALSE FALSE 5901168 250687277 kidney hek 2013-07-29T15:44:43.480 2013-09-01T01:12:48.550 2014-03-07T15:15:15.519 43 GSM1197374 SRR944332.bw HEK50cells_1 c("cell line: HEK293T", "library prep protocol: SMART-Seq2") SRP028301 SRS464892 SRX328753 SRR944334 7543466 7543466 1 FALSE FALSE 7443134 315206085 kidney hek 2013-07-29T15:45:09.357 2013-09-01T01:12:50.697 2014-03-07T15:15:16.430 43 GSM1197376 SRR944334.bw HEK50cells_3 c("cell line: HEK293T", "library prep protocol: SMART-Seq2") SRP028301 SRS464893 SRX328752 SRR944333 5960297 5960297 1 FALSE FALSE 5850494 247625615 kidney hek 2013-07-29T15:44:41.250 2013-09-01T01:12:58.580 2014-03-07T15:15:15.449 43 GSM1197375 SRR944333.bw HEK50cells_2 c("cell line: HEK293T", "library prep protocol: SMART-Seq2") SRP028301 SRS464894 SRX328754 SRR944335 6759941 6759941 1 FALSE FALSE 6662686 283314735 kidney hek 2013-07-29T15:44:27.160 2013-09-01T01:12:52.707 2014-03-07T15:15:15.353 43 GSM1197377 SRR944335.bw HEK10cells_1 c("cell line: HEK293T", "library prep protocol: SMART-Seq2") SRP028301 SRS464895 SRX328755 SRR944336 7192454 7192454 1 FALSE FALSE 7092803 301459395 kidney hek 2013-07-29T15:44:46.257 2013-09-01T01:12:54.740 2014-03-07T15:15:15.584 43 GSM1197378 SRR944336.bw HEK10cells_2 c("cell line: HEK293T", "library prep protocol: SMART-Seq2") SRP028301 SRS464896 SRX328756 SRR944337 5469868 5469868 1 FALSE FALSE 5395513 229744212 kidney hek 2013-07-29T15:44:44.727 2013-09-01T01:12:56.610 2014-03-07T15:15:15.552 43 GSM1197379 SRR944337.bw HEK10cells_3 c("cell line: HEK293T", "library prep protocol: SMART-Seq2") SRP028301 SRS464897 SRX328757 SRR944338 15568239 15568239 1 FALSE FALSE 12621851 506993383 intestine esc 2013-07-29T15:45:24.563 2013-09-01T01:13:02.517 2014-03-07T15:15:16.464 43 GSM1197380 SRR944338.bw BC_1 c("cell line: DG-75", "library prep protocol: SMART-Seq2") SRP028301 SRS464898 SRX328758 SRR944339 22753124 22753124 1 FALSE FALSE 17751897 718626244 umbilical cord esc 2013-07-29T15:45:00.847 2013-09-01T01:13:00.480 2014-03-07T15:15:16.205 43 GSM1197381 SRR944339.bw BC_10 c("cell line: DG-75", "library prep protocol: SMART-Seq2") SRP028301 SRS464899 SRX328759 SRR944340 8057316 8057316 1 FALSE FALSE 5942440 235601442 umbilical cord esc 2013-07-29T15:45:25.600 2013-09-01T01:13:06.843 2014-03-07T15:15:16.494 43 GSM1197382 SRR944340.bw BC_11 c("cell line: DG-75", "library prep protocol: SMART-Seq2") SRP028301 SRS464900 SRX328760 SRR944341 17825855 17825855 1 FALSE FALSE 12710393 506276331 umbilical cord esc 2013-07-29T15:42:26.727 2013-09-01T01:13:04.760 2014-03-07T15:15:14.469 43 GSM1197383 SRR944341.bw BC_12 c("cell line: DG-75", "library prep protocol: SMART-Seq2") SRP028301 SRS464901 SRX328761 SRR944342 16332314 16332314 1 FALSE FALSE 12636426 510991060 umbilical cord esc 2013-07-29T15:44:47.413 2013-09-01T01:13:13.057 2014-03-07T15:15:15.615 43 GSM1197384 SRR944342.bw BC_15 c("cell line: DG-75", "library prep protocol: SMART-Seq2") SRP028301 SRS464902 SRX328762 SRR944343 19883985 19883985 1 FALSE FALSE 16516636 666462747 umbilical cord esc 2013-07-29T15:42:40.327 2013-09-01T01:12:17.343 2014-03-07T15:15:14.513 43 GSM1197385 SRR944343.bw BC_3 c("cell line: DG-75", "library prep protocol: SMART-Seq2") SRP028301 SRS464903 SRX328763 SRR944344 19720948 19720948 1 FALSE FALSE 14724899 588859359 umbilical cord esc 2013-07-29T15:42:41.783 2013-09-01T01:12:15.360 2014-03-07T15:15:14.544 43 GSM1197386 SRR944344.bw BC_8 c("cell line: DG-75", "library prep protocol: SMART-Seq2") SRP028301 SRS464845 SRX328705 SRR944286 37631659 0 0 FALSE FALSE 0 NA kidney hek 2013-07-29T15:31:38.550 2013-09-01T01:13:52.070 2014-03-07T15:15:13.126 43 GSM1197328 NA HEK_106 c("cell line: HEK293T", "library prep protocol: SMART-Seq2 (variant 1)")