project sample experiment run read_count_as_reported_by_sra reads_downloaded proportion_of_reads_reported_by_sra_downloaded paired_end sra_misreported_paired_end mapped_read_count auc sharq_beta_tissue sharq_beta_cell_type biosample_submission_date biosample_publication_date biosample_update_date avg_read_length geo_accession bigwig_file title characteristics SRP028325 SRS465167 SRX329057 SRR944651 42383268 42383268 1 FALSE FALSE 36868671 3642562387 cervix hela 2013-07-30T08:30:11.047 2013-11-30T01:13:09.560 2014-03-07T15:15:18.459 100 GSM1197610 SRR944651.bw YTHDF2-RIP-input polyA B3 c("cell line: HeLa", "treatment: over-express N-terminal flag-tagged YTHDF2 for 24h (0.75ug plasmid/mL)") SRP028325 SRS465168 SRX329058 SRR944652 33558367 33558367 1 FALSE FALSE 29670821 2927792551 cervix hela 2013-07-30T08:30:15.473 2013-11-30T01:12:53.773 2014-03-07T15:15:18.589 100 GSM1197611 SRR944652.bw YTHDF2-RIP-input ribominus B4 c("cell line: HeLa", "treatment: over-express N-terminal flag-tagged YTHDF2 for 24h(0.75ug plasmid/mL)") SRP028325 SRS465170 SRX329060 SRR944654 62803902 62803902 1 FALSE FALSE 53793617 2494114980 cervix hela 2013-07-30T08:30:16.507 2013-11-30T01:13:17.063 2014-03-07T15:15:18.618 100 GSM1197613 SRR944654.bw Ribosome profiling rep1-SiControl-input-polyA C2 c("cell line: HeLa", "treatment: 40nM siRNA knock-down for 48h") SRP028325 SRS465172 SRX329062 SRR944656 35941531 35941531 1 FALSE FALSE 34046971 3369443861 cervix hela 2013-07-30T08:30:19.647 2013-11-30T01:30:34.620 2014-03-07T15:15:18.712 100 GSM1197615 SRR944656.bw Ribosome profiling rep1-SiYTHDF2-input-polyA C4 c("cell line: HeLa", "treatment: 40nM siRNA knock-down for 48h") SRP028325 SRS465174 SRX329064 SRR944658 33031380 33031380 1 FALSE FALSE 30550733 1394453425 cervix hela 2013-07-30T08:30:20.827 2013-11-30T01:12:57.513 2014-03-07T15:15:18.742 100 GSM1197617 SRR944658.bw Ribosome profiling rep2-SiControl-input-polyA C6 c("cell line: HeLa", "treatment: 40nM siRNA knock-down for 48h") SRP028325 SRS465177 SRX329067 SRR944661 29419545 29419545 1 FALSE FALSE 26634887 1150581551 cervix hela 2013-07-30T08:30:24.503 2013-11-30T01:12:56.200 2014-03-07T15:15:18.847 100 GSM1197620 SRR944661.bw Ribosome profiling rep2-SiYTHDF2-input-polyA C9 c("cell line: HeLa", "treatment: 40nM siRNA knock-down for 48h") SRP028325 SRS465179 SRX329069 SRR944663 20320604 20320604 1 FALSE FALSE 20183947 1994893946 cervix hela 2013-07-30T08:30:25.580 2013-11-30T01:13:15.890 2014-03-07T15:15:18.879 100 GSM1197622 SRR944663.bw mRNA lifetime-SiControl-TI-0h D1 c("cell line: HeLa", "treatment: 40nM siRNA knock-down for 48h, then add actinomycin for 0h") SRP028325 SRS465180 SRX329070 SRR944664 17552245 17552245 1 FALSE FALSE 17390935 1732168753 cervix hela 2013-07-30T08:30:27.787 2013-11-30T01:21:11.097 2014-03-07T15:15:18.939 100 GSM1197623 SRR944664.bw mRNA lifetime-SiControl-TI-3h D2 c("cell line: HeLa", "treatment: 40nM siRNA knock-down for 48h, then add actinomycin for 3h") SRP028325 SRS465181 SRX329071 SRR944665 25815824 25815824 1 FALSE FALSE 25484839 2535757758 cervix hela 2013-07-30T08:30:28.873 2013-11-30T01:21:04.587 2014-03-07T15:15:18.978 100 GSM1197624 SRR944665.bw mRNA lifetime-SiControl-TI-6h D3 c("cell line: HeLa", "treatment: 40nM siRNA knock-down for 48h, then add actinomycin for 6h") SRP028325 SRS465182 SRX329072 SRR944666 24074368 24074368 1 FALSE FALSE 23930332 2381161493 cervix hela 2013-07-30T08:30:29.900 2013-11-30T01:21:07.460 2014-03-07T15:15:19.012 100 GSM1197625 SRR944666.bw mRNA lifetime-SiYTHDF2-TI-0h D4 c("cell line: HeLa", "treatment: 40nM siRNA knock-down for 48h, then add actinomycin for 0h") SRP028325 SRS465183 SRX329073 SRR944667 19641191 19641191 1 FALSE FALSE 19440439 1935016042 cervix hela 2013-07-30T08:30:32.170 2013-11-30T01:21:05.807 2014-03-07T15:15:19.074 100 GSM1197626 SRR944667.bw mRNA lifetime-SiYTHDF2-TI-3h D5 c("cell line: HeLa", "treatment: 40nM siRNA knock-down for 48h, then add actinomycin for 3h") SRP028325 SRS465184 SRX329074 SRR944668 28305440 28305440 1 FALSE FALSE 28050171 2793087361 cervix hela 2013-07-30T08:30:34.597 2013-11-30T01:19:27.923 2014-03-07T15:15:19.135 100 GSM1197627 SRR944668.bw mRNA lifetime-SiYTHDF2-TI-6h D6 c("cell line: HeLa", "treatment: 40nM siRNA knock-down for 48h, then add actinomycin for 6h") SRP028325 SRS465185 SRX329075 SRR944669 24862600 24862600 1 FALSE FALSE 22510427 2211549177 cervix hela 2013-07-30T08:30:31.140 2013-11-30T01:19:51.727 2014-03-07T15:15:19.041 100 GSM1197628 SRR944669.bw mRNA lifetime-SiControl-TI-0h E1 c("cell line: HeLa", "treatment: 40nM siRNA knock-down for 48h, then add actinomycin for 0h") SRP028325 SRS465186 SRX329076 SRR944670 29106753 29106753 1 FALSE FALSE 25808448 2543467928 cervix hela 2013-07-30T08:30:33.430 2013-11-30T01:19:35.667 2014-03-07T15:15:19.105 100 GSM1197629 SRR944670.bw mRNA lifetime-SiControl-TI-3h E2 c("cell line: HeLa", "treatment: 40nM siRNA knock-down for 48h, then add actinomycin for 3h") SRP028325 SRS465187 SRX329077 SRR944671 42971395 42971395 1 FALSE FALSE 37078776 3629535241 cervix hela 2013-07-30T08:30:37.223 2013-11-30T01:19:33.670 2014-03-07T15:15:19.197 100 GSM1197630 SRR944671.bw mRNA lifetime-SiControl-TI-6h E3 c("cell line: HeLa", "treatment: 40nM siRNA knock-down for 48h, then add actinomycin for 6h") SRP028325 SRS465188 SRX329078 SRR944672 27670321 27670321 1 FALSE FALSE 24426180 2395087762 cervix hela 2013-07-30T08:30:35.650 2013-11-30T01:12:58.717 2014-03-07T15:15:19.166 100 GSM1197631 SRR944672.bw mRNA lifetime-SiYTHDF2-TI-0h E4 c("cell line: HeLa", "treatment: 40nM siRNA knock-down for 48h, then add actinomycin for 0h") SRP028325 SRS465189 SRX329079 SRR944673 33433139 33433139 1 FALSE FALSE 29255981 2867719231 cervix hela 2013-07-30T08:30:38.447 2013-11-30T01:30:45.400 2014-03-07T15:15:19.228 100 GSM1197632 SRR944673.bw mRNA lifetime-SiYTHDF2-TI-3h E5 c("cell line: HeLa", "treatment: 40nM siRNA knock-down for 48h, then add actinomycin for 3h") SRP028325 SRS465190 SRX329080 SRR944674 23289788 23289788 1 FALSE FALSE 20255018 1988531272 cervix hela 2013-07-30T08:30:39.430 2013-11-30T01:12:59.960 2014-03-07T15:15:19.264 100 GSM1197633 SRR944674.bw mRNA lifetime-SiYTHDF2-TI-6h E6 c("cell line: HeLa", "treatment: 40nM siRNA knock-down for 48h, then add actinomycin for 6h")