project sample experiment run read_count_as_reported_by_sra reads_downloaded proportion_of_reads_reported_by_sra_downloaded paired_end sra_misreported_paired_end mapped_read_count auc sharq_beta_tissue sharq_beta_cell_type biosample_submission_date biosample_publication_date biosample_update_date avg_read_length geo_accession bigwig_file title characteristics SRP037722 SRS557199 SRX469967 SRR1168261 1335874 1335874 1 TRUE FALSE 1275102 127617391 cervix hela 2014-02-12T10:20:28.837 2014-03-20T00:44:08.693 2014-03-20T01:44:37.967 235 GSM1326566 SRR1168261.bw Sample 1_H2ABNONE_combined_R1 c("cell type: HeLa cells", "3' linker: SOLID Reverse", "sample group: No d(A) priming") SRP037722 SRS557200 SRX469968 SRR1168262 479943 479943 1 FALSE FALSE 3047 145893 cervix esc 2014-02-12T10:20:19.370 2014-03-20T00:44:08.443 2014-03-20T01:44:38.387 151 GSM1326567 SRR1168262.bw Sample 2_C2NONE_ATCAC_L001_R1_001 c("cell type: HeLa cells", "3' linker: NEB+Ext", "sample group: Cap analog Luciferase") SRP037722 SRS557201 SRX469970 SRR1168264 1206734 1206734 1 TRUE FALSE 1116882 133693993 blood esc 2014-02-12T10:20:25.673 2014-03-20T00:44:08.650 2014-03-20T01:44:38.783 302 GSM1326569 SRR1168264.bw Sample 4_HUCHX1_ATCAC_L001_R1_001 c("cell type: Jurkat cells", "3' linker: NEB+Ext", "sample group: Polysome Control") SRP037722 SRS557202 SRX469969 SRR1168263 1044637 1044637 1 FALSE FALSE 34067 986751 cervix esc 2014-02-12T10:20:21.513 2014-03-20T00:44:08.573 2014-03-20T01:44:39.223 151 GSM1326568 SRR1168263.bw Sample 3_D4NONE_GGCTA_L001_R1_001 c("cell type: HeLa cells", "3' linker: NEB+Ext", "sample group: Cap analog Luciferase") SRP037722 SRS557203 SRX469971 SRR1168265 1176382 1176382 1 TRUE FALSE 1117633 140754915 blood esc 2014-02-12T10:20:23.747 2014-03-20T00:44:08.613 2014-03-20T01:44:39.643 302 GSM1326570 SRR1168265.bw Sample 5_HUCHX2_CGATG_L001_R1_001 c("cell type: Jurkat cells", "3' linker: NEB+Ext", "sample group: Polysome Control") SRP037722 SRS557204 SRX469972 SRR1168266 1458266 1458266 1 TRUE FALSE 1367170 166349055 blood esc 2014-02-12T10:21:02.460 2014-03-20T00:44:09.250 2014-03-20T01:44:40.157 302 GSM1326571 SRR1168266.bw Sample 6_HUCHX3_TTAGG_L001_R1_001 c("cell type: Jurkat cells", "3' linker: NEB+Ext", "sample group: Polysome Control") SRP037722 SRS557205 SRX469974 SRR1168268 1042696 1042696 1 TRUE FALSE 984872 123757043 blood esc 2014-02-12T10:20:43.710 2014-03-20T00:44:08.947 2014-03-20T01:44:40.627 302 GSM1326573 SRR1168268.bw Sample 8_HUCHX_ACAGT_L001_R1_001 c("cell type: Jurkat cells", "3' linker: NEB+Ext", "sample group: Polysome Control") SRP037722 SRS557206 SRX469973 SRR1168267 762034 762034 1 TRUE FALSE 713433 81895120 blood esc 2014-02-12T10:20:58.040 2014-03-20T00:44:09.173 2014-03-20T01:44:41.023 302 GSM1326572 SRR1168267.bw Sample 7_HUCHX4_TGACC_L001_R1_001 c("cell type: Jurkat cells", "3' linker: NEB+Ext", "sample group: Polysome Control") SRP037722 SRS557207 SRX469975 SRR1168269 511230 511230 1 TRUE FALSE 477069 59796052 blood esc 2014-02-12T10:20:55.933 2014-03-20T00:44:09.140 2014-03-20T01:44:41.397 302 GSM1326574 SRR1168269.bw Sample 9_HUCHX6_GCCAA_L001_R1_001 c("cell type: Jurkat cells", "3' linker: NEB+Ext", "sample group: Polysome Control") SRP037722 SRS557208 SRX469976 SRR1168270 2115076 2115076 1 TRUE FALSE 1947971 240014347 blood esc 2014-02-12T10:20:41.583 2014-03-20T00:44:08.910 2014-03-20T01:44:41.763 302 GSM1326575 SRR1168270.bw Sample 10_HUCHXP7_CAGAT_L001_R1_001 c("cell type: Jurkat cells", "3' linker: NEB+Ext", "sample group: Polysome Pactamycin") SRP037722 SRS557209 SRX469977 SRR1168271 862528 862528 1 TRUE FALSE 834615 106381972 blood esc 2014-02-12T10:20:37.380 2014-03-20T00:44:08.833 2014-03-20T01:44:42.157 302 GSM1326576 SRR1168271.bw Sample 11_HUCHXP8_ACTTG_L001_R1_001 c("cell type: Jurkat cells", "3' linker: NEB+Ext", "sample group: Polysome Pactamycin") SRP037722 SRS557210 SRX469978 SRR1168272 2464138 2464138 1 TRUE FALSE 2320614 281276233 blood esc 2014-02-12T10:21:04.587 2014-03-20T00:44:09.287 2014-03-20T01:40:17.127 302 GSM1326577 SRR1168272.bw Sample 12_HUCHXP9_GATCA_L001_R1_001 c("cell type: Jurkat cells", "3' linker: NEB+Ext", "sample group: Polysome Pactamycin") SRP037722 SRS557211 SRX469979 SRR1168273 2610234 2610234 1 TRUE FALSE 2453340 307113307 blood esc 2014-02-12T10:20:53.603 2014-03-20T00:44:09.103 2014-03-20T01:40:18.613 302 GSM1326578 SRR1168273.bw Sample 13_HUCHXP10_TAGCT_L001_R1_001 c("cell type: Jurkat cells", "3' linker: NEB+Ext", "sample group: Polysome Pactamycin") SRP037722 SRS557212 SRX469980 SRR1168274 1564828 1564828 1 TRUE FALSE 1439437 172066862 blood esc 2014-02-12T10:20:39.460 2014-03-20T00:44:08.873 2014-03-20T01:40:19.167 302 GSM1326579 SRR1168274.bw Sample 14_HUCHXP11_GGCTA_L001_R1_001 c("cell type: Jurkat cells", "3' linker: NEB+Ext", "sample group: Polysome Pactamycin") SRP037722 SRS557213 SRX469981 SRR1168275 1832162 1832162 1 TRUE FALSE 1709759 214734416 blood esc 2014-02-12T10:20:51.157 2014-03-20T00:44:09.067 2014-03-20T01:44:42.600 302 GSM1326580 SRR1168275.bw Sample 15_HUCHXP12_CTTGT_L001_R1_001 c("cell type: Jurkat cells", "3' linker: NEB+Ext", "sample group: Polysome Pactamycin") SRP037722 SRS557214 SRX469982 SRR1168276 189184 189184 1 TRUE FALSE 137293 18322649 cervix esc 2014-02-12T10:20:46.503 2014-03-20T00:44:08.983 2014-03-20T01:44:42.990 300 GSM1326581 SRR1168276.bw Sample 16_7mG_S1_L001_R1_001 c("cell type: HeLa cells", "3' linker: NEB+Ext", "sample group: 7mG IP - Combined") SRP037722 SRS557215 SRX469983 SRR1168277 199176 199176 1 TRUE FALSE 185804 24740422 cervix esc 2014-02-12T10:20:34.460 2014-03-20T00:44:08.800 2014-03-20T01:40:19.643 300 GSM1326582 SRR1168277.bw Sample 17_7mG-dA3_S2_L001_R1_001 c("cell type: HeLa cells", "3' linker: NEB+Ext", "sample group: 7mG IP - Combined") SRP037722 SRS557216 SRX469984 SRR1168278 446840 446840 1 TRUE FALSE 374706 50207836 cervix hela 2014-02-12T10:20:59.943 2014-03-20T00:44:09.210 2014-03-20T01:40:20.080 300 GSM1326583 SRR1168278.bw Sample 18_HU00_S4_L001_R1_001 c("cell type: HeLa cells", "3' linker: NEB+Ext", "sample group: HU Time course - Controls") SRP037722 SRS557217 SRX469985 SRR1168279 161130 161130 1 TRUE FALSE 145497 19347311 cervix hela 2014-02-12T10:20:48.983 2014-03-20T00:44:09.027 2014-03-20T01:40:20.567 299 GSM1326584 SRR1168279.bw Sample 19_HU20_S5_L001_R1_001 c("cell type: HeLa cells", "3' linker: NEB+Ext", "sample group: HU Time course - Controls") SRP037722 SRS557218 SRX469986 SRR1168280 480484 480484 1 TRUE FALSE 406947 53872093 cervix hela 2014-02-12T10:20:31.593 2014-03-20T00:44:08.760 2014-03-20T01:40:21.050 299 GSM1326585 SRR1168280.bw Sample 20_C2-00-siR_S10_L001_R1_001 c("cell type: HeLa cells", "3' linker: NEB+Ext", "sample group: Exosome siRNA Pm\\Scl-100") SRP037722 SRS557219 SRX469987 SRR1168281 400234 400234 1 TRUE FALSE 359445 46512295 cervix hela 2014-02-12T10:21:22.740 2014-03-20T00:44:09.530 2014-03-20T01:40:21.567 296 GSM1326586 SRR1168281.bw Sample 21_C2-20-siR_S11_L001_R1_001 c("cell type: HeLa cells", "3' linker: NEB+Ext", "sample group: Exosome siRNA Pm\\Scl-100") SRP037722 SRS557220 SRX469988 SRR1168282 489480 489480 1 TRUE FALSE 373180 41399540 cervix hela 2014-02-12T10:21:13.073 2014-03-20T00:44:09.393 2014-03-20T01:40:22.207 272 GSM1326587 SRR1168282.bw Sample 22_100-00-siR_S12_L001_R1_001 c("cell type: HeLa cells", "3' linker: NEB+Ext", "sample group: Exosome siRNA Pm\\Scl-100") SRP037722 SRS557221 SRX469989 SRR1168283 587370 587370 1 TRUE FALSE 425578 56054712 cervix hela 2014-02-12T10:21:18.413 2014-03-20T00:44:09.463 2014-03-20T01:40:22.710 299 GSM1326588 SRR1168283.bw Sample 23_100-20-siR_S13_L001_R1_001 c("cell type: HeLa cells", "3' linker: NEB+Ext", "sample group: Exosome siRNA Pm\\Scl-100") SRP037722 SRS557222 SRX469990 SRR1168284 4693264 4693264 1 TRUE FALSE 80240 3079788 cervix hela 2014-02-12T10:21:20.290 2014-03-20T00:44:09.497 2014-03-20T01:40:23.170 302 GSM1326589 SRR1168284.bw Sample 24_ARCA-LUC-TL_CGATG_L001_R1_001 c("cell type: HeLa cells", "3' linker: NEB+Ext", "sample group: Luciferase tetra-loop construct") SRP037722 SRS557223 SRX469991 SRR1168285 5706552 5706552 1 TRUE FALSE 26489 1973444 cervix hela 2014-02-12T10:21:09.767 2014-03-20T00:44:09.357 2014-03-20T01:40:23.650 302 GSM1326590 SRR1168285.bw Sample 25_BTH-LUC-TL_ATCAC_L001_R1_001 c("cell type: HeLa cells", "3' linker: NEB+Ext", "sample group: Luciferase tetra-loop construct") SRP037722 SRS557224 SRX469992 SRR1168286 173106 173106 1 TRUE FALSE 156389 20871880 cervix esc 2014-02-12T10:21:15.663 2014-03-20T00:44:09.430 2014-03-20T01:44:43.373 302 GSM1326591 SRR1168286.bw Sample 26_WT_Upf1_00_GGCTA_L001_R1_001 c("cell type: HeLa cells", "3' linker: NEB+Ext", "sample group: No dA priming") SRP037722 SRS557225 SRX469993 SRR1168287 399184 399184 1 TRUE FALSE 353340 47023750 cervix esc 2014-02-12T10:21:07.190 2014-03-20T00:44:09.320 2014-03-20T01:40:24.170 302 GSM1326592 SRR1168287.bw Sample 27_WT_Upf1_20_CTTGT_L001_R1_001 c("cell type: HeLa cells", "3' linker: NEB+Ext", "sample group: No dA priming")