project sample experiment run read_count_as_reported_by_sra reads_downloaded proportion_of_reads_reported_by_sra_downloaded paired_end sra_misreported_paired_end mapped_read_count auc sharq_beta_tissue sharq_beta_cell_type biosample_submission_date biosample_publication_date biosample_update_date avg_read_length geo_accession bigwig_file title characteristics SRP039591 SRS567843 SRX483398 SRR1186052 111973422 111973422 1 TRUE FALSE 111081196 11026564123 spleen esc 2014-03-10T08:40:33.663 2014-03-11T00:44:15.627 2014-03-13T01:26:36.670 200 GSM1342284 SRR1186052.bw case 4 c("diagnosis: Hepatosplenic T-cell lymphoma (HSTL)", "karyotype: 45-46,X,-Y,-4,der(7)add(7)(p22)add(7)(q32), i(7)(q10),+i(7)(q10)[2],der(8)t(1;8)(q21; p23),-22,+mar1,+mar2[cp11].aCGH+8", "tissue: Spleen") SRP039591 SRS567844 SRX483399 SRR1186053 83995714 83995714 1 TRUE FALSE 83132966 8246111167 spleen esc 2014-03-10T08:40:20.150 2014-03-11T00:44:15.430 2014-03-13T01:26:37.113 200 GSM1342285 SRR1186053.bw case 5 c("diagnosis: Hepatosplenic T-cell lymphoma (HSTL)", "karyotype: 46-47,XY,add(4)(p16),i(7)(q10),+8[4],-[20],+mar[2][cp6]", "tissue: Spleen") SRP039591 SRS567845 SRX483401 SRR1186055 100046030 100046030 1 TRUE FALSE 99108450 9930775087 breast esc 2014-03-10T08:40:23.557 2014-03-11T00:44:15.473 2014-03-13T01:26:37.463 202 GSM1342287 SRR1186055.bw DERL2 c("diagnosis: Hepatosplenic T-cell lymphoma (HSTL)", "karyotype: 46,XY,add(5)(q?),i(7)(q10),-10[5][cp15]c .aCGH+8", "tissue: culture") SRP039591 SRS567846 SRX483400 SRR1186054 119494602 119494602 1 TRUE FALSE 117976460 11832696159 spleen esc 2014-03-10T08:40:36.157 2014-03-11T00:44:15.657 2014-03-13T01:26:38.147 202 GSM1342286 SRR1186054.bw case 7 c("diagnosis: Hepatosplenic T-cell lymphoma (HSTL)", "karyotype: 40-48,XY,+X [3],-5[4],i(7)(q10),+8[5],+10[2],add(11)(q22)[10],inc[cp12].aCGH+8", "tissue: Spleen") SRP039591 SRS567847 SRX483402 SRR1186056 54429770 54429770 1 TRUE FALSE 53823588 5383152737 spleen esc 2014-03-10T08:40:31.130 2014-03-11T00:44:15.590 2014-03-13T01:26:38.500 202 GSM1342288 SRR1186056.bw normal-spleen c("diagnosis: normal tissue", "karyotype: NA", "tissue: Spleen") SRP039591 SRS567848 SRX483403 SRR1186057 68836156 68836156 1 TRUE FALSE 67812300 6785812658 breast esc 2014-03-10T08:40:38.573 2014-03-11T00:44:15.690 2014-03-13T01:26:38.780 202 GSM1342289 SRR1186057.bw PTCL-NOS-1 c("diagnosis: Peripheral T-cell lymphoma not otherwise specified (PTCL-NOS)", "karyotype: 46,XX,t(1;5)(p34;q22)", "tissue: Lymph node") SRP039591 SRS567849 SRX483405 SRR1186059 85527686 85527686 1 TRUE FALSE 84925525 8491331693 spleen esc 2014-03-10T08:40:28.757 2014-03-11T00:44:15.553 2014-03-13T01:26:39.160 202 GSM1342291 SRR1186059.bw PTCL-NOS-3 c("diagnosis: Peripheral T-cell lymphoma not otherwise specified (PTCL-NOS)", "karyotype: 35-47,X,-X[9],?der(2)dup(2)(q13q23),+3[2],t(3;14)(p13;q32),del(5)(q11q13),del(6)(p23p25),+7[5],-8[4],add(11)(p15),+19,-20[3],+22[2],inc[cp11]", "tissue: Spleen") SRP039591 SRS567850 SRX483404 SRR1186058 46670200 46670200 1 FALSE TRUE 45072761 3402203191 breast esc 2014-03-10T08:40:26.367 2014-03-11T00:44:15.517 2014-03-13T01:26:39.427 76 GSM1342290 SRR1186058.bw PTCL-NOS-2 c("diagnosis: Peripheral T-cell lymphoma not otherwise specified (PTCL-NOS)", "karyotype: 38-47,XX,+X[10],+2[12],+3[2],del(6)(q15q25),+7[13],add(16)(q24)[14],-18[10],-20[9][cp16]", "tissue: Lymph node")