project sample experiment run read_count_as_reported_by_sra reads_downloaded proportion_of_reads_reported_by_sra_downloaded paired_end sra_misreported_paired_end mapped_read_count auc sharq_beta_tissue sharq_beta_cell_type biosample_submission_date biosample_publication_date biosample_update_date avg_read_length geo_accession bigwig_file title characteristics SRP041162 SRS591803 SRX516754 SRR1238006 18394387 18394387 1 FALSE FALSE 18391741 932755500 colon hct 2014-04-14T17:26:58.173 2014-07-08T00:44:10.973 2014-07-08T01:15:29.113 51 GSM1369063 SRR1238006.bw mock rep1 c("cell line: vorinostat-resistant HCT116", "treatment: mock") SRP041162 SRS591804 SRX516755 SRR1238007 13758648 13758648 1 FALSE FALSE 13756764 697700884 colon hct 2014-04-14T17:26:27.010 2014-07-08T00:44:10.613 2014-07-08T01:15:29.653 51 GSM1369064 SRR1238007.bw siBEGAIN rep1 c("cell line: vorinostat-resistant HCT116", "treatment: siBEGAIN") SRP041162 SRS591805 SRX516756 SRR1238008 26430192 26430192 1 FALSE FALSE 26426139 1340031084 colon hct 2014-04-14T17:26:40.500 2014-07-08T00:44:10.760 2014-07-08T01:15:30.003 51 GSM1369065 SRR1238008.bw siCCNK rep1 c("cell line: vorinostat-resistant HCT116", "treatment: siCCNK") SRP041162 SRS591806 SRX516757 SRR1238009 11926761 11926761 1 FALSE FALSE 11924976 604654414 colon hct 2014-04-14T17:26:51.453 2014-07-08T00:44:10.863 2014-07-08T01:15:30.377 51 GSM1369066 SRR1238009.bw siCDK10 rep1 c("cell line: vorinostat-resistant HCT116", "treatment: siCDK10") SRP041162 SRS591807 SRX516758 SRR1238010 14012687 14012687 1 FALSE FALSE 14009041 711012467 colon hct 2014-04-14T17:26:21.770 2014-07-08T00:44:10.453 2014-07-08T01:15:30.700 51 GSM1369067 SRR1238010.bw siDPPA5 rep1 c("cell line: vorinostat-resistant HCT116", "treatment: siDPPA5") SRP041162 SRS591808 SRX516759 SRR1238011 17264395 17264395 1 FALSE FALSE 17261773 875404607 colon hct 2014-04-14T17:26:37.813 2014-07-08T00:44:10.733 2014-07-08T01:15:31.060 51 GSM1369068 SRR1238011.bw siEIF3L rep1 c("cell line: vorinostat-resistant HCT116", "treatment: siEIF3L") SRP041162 SRS591809 SRX516760 SRR1238012 16841563 16841563 1 FALSE FALSE 16838827 854745619 colon hct 2014-04-14T17:26:48.777 2014-07-08T00:44:10.837 2014-07-08T01:15:31.333 51 GSM1369069 SRR1238012.bw siGLI1 rep1 c("cell line: vorinostat-resistant HCT116", "treatment: siGLI1") SRP041162 SRS591810 SRX516761 SRR1238013 19008717 19008717 1 FALSE FALSE 19003790 964485827 colon hct 2014-04-14T17:26:24.370 2014-07-08T00:44:10.557 2014-07-08T01:15:31.590 51 GSM1369070 SRR1238013.bw siJAK2 rep1 c("cell line: vorinostat-resistant HCT116", "treatment: siJAK2") SRP041162 SRS591811 SRX516762 SRR1238014 12986269 12986269 1 FALSE FALSE 12984201 658223478 colon hct 2014-04-14T17:26:32.290 2014-07-08T00:44:10.673 2014-07-08T01:15:31.870 51 GSM1369071 SRR1238014.bw siNFYA rep1 c("cell line: vorinostat-resistant HCT116", "treatment: siNFYA") SRP041162 SRS591812 SRX516763 SRR1238015 16712374 16712374 1 FALSE FALSE 16709453 848152663 colon hct 2014-04-14T17:26:56.500 2014-07-08T00:44:10.940 2014-07-08T01:15:32.173 51 GSM1369072 SRR1238015.bw siPOLR2D rep1 c("cell line: vorinostat-resistant HCT116", "treatment: siPOLR2D") SRP041162 SRS591813 SRX516764 SRR1238016 13782737 13782737 1 FALSE FALSE 13780602 698762509 colon hct 2014-04-14T17:26:34.817 2014-07-08T00:44:10.703 2014-07-08T01:15:32.780 51 GSM1369073 SRR1238016.bw siPSMD13 rep1 c("cell line: vorinostat-resistant HCT116", "treatment: siPSMD13") SRP041162 SRS591814 SRX516765 SRR1238017 16399848 16399848 1 FALSE FALSE 16397214 831866081 colon hct 2014-04-14T17:26:43.163 2014-07-08T00:44:10.787 2014-07-08T01:15:33.180 51 GSM1369074 SRR1238017.bw siRGS18 rep1 c("cell line: vorinostat-resistant HCT116", "treatment: siRGS18") SRP041162 SRS591815 SRX516766 SRR1238018 14471644 14471644 1 FALSE FALSE 14469414 733620253 colon hct 2014-04-14T17:27:00.270 2014-07-08T00:44:11.000 2014-07-08T01:15:33.617 51 GSM1369075 SRR1238018.bw siSAP130 rep1 c("cell line: vorinostat-resistant HCT116", "treatment: siSAP130") SRP041162 SRS591816 SRX516767 SRR1238019 14561182 14561182 1 FALSE FALSE 14557425 738832465 colon hct 2014-04-14T17:26:29.723 2014-07-08T00:44:10.643 2014-07-08T01:15:33.983 51 GSM1369076 SRR1238019.bw siTGM5 rep1 c("cell line: vorinostat-resistant HCT116", "treatment: siTGM5") SRP041162 SRS591817 SRX516768 SRR1238020 17051622 17051622 1 FALSE FALSE 17049006 865070725 colon hct 2014-04-14T17:26:45.770 2014-07-08T00:44:10.810 2014-07-08T01:19:35.587 51 GSM1369077 SRR1238020.bw siTOX4 rep1 c("cell line: vorinostat-resistant HCT116", "treatment: siTOX4") SRP041162 SRS591818 SRX516769 SRR1238021 14581166 14581166 1 FALSE FALSE 14577312 739794187 colon hct 2014-04-14T17:27:02.720 2014-07-08T00:44:11.033 2014-07-08T01:19:35.890 51 GSM1369078 SRR1238021.bw mock rep2 c("cell line: vorinostat-resistant HCT116", "treatment: mock") SRP041162 SRS591819 SRX516770 SRR1238022 18207758 18207758 1 FALSE FALSE 18203052 923827361 colon hct 2014-04-14T17:26:54.183 2014-07-08T00:44:10.890 2014-07-08T01:19:36.137 51 GSM1369079 SRR1238022.bw siBEGAIN rep2 c("cell line: vorinostat-resistant HCT116", "treatment: siBEGAIN") SRP041162 SRS591820 SRX516771 SRR1238023 16785154 16785154 1 FALSE FALSE 16782593 851582824 colon hct 2014-04-14T17:27:10.063 2014-07-08T00:44:11.117 2014-07-08T01:19:36.380 51 GSM1369080 SRR1238023.bw siCCNK rep2 c("cell line: vorinostat-resistant HCT116", "treatment: siCCNK") SRP041162 SRS591821 SRX516772 SRR1238024 12726019 12726019 1 FALSE FALSE 12724076 645101494 colon hct 2014-04-14T17:27:05.103 2014-07-08T00:44:11.067 2014-07-08T01:23:21.160 51 GSM1369081 SRR1238024.bw siCDK10 rep2 c("cell line: vorinostat-resistant HCT116", "treatment: siCDK10") SRP041162 SRS591822 SRX516773 SRR1238025 12870208 12870208 1 FALSE FALSE 12868091 653193445 colon hct 2014-04-14T17:27:15.143 2014-07-08T00:44:11.173 2014-07-08T01:23:21.670 51 GSM1369082 SRR1238025.bw siDPPA5 rep2 c("cell line: vorinostat-resistant HCT116", "treatment: siDPPA5") SRP041162 SRS591823 SRX516774 SRR1238026 17081030 17081030 1 FALSE FALSE 17078339 866144003 colon hct 2014-04-14T17:27:20.223 2014-07-08T00:44:11.227 2014-07-08T01:23:22.127 51 GSM1369083 SRR1238026.bw siEIF3L rep2 c("cell line: vorinostat-resistant HCT116", "treatment: siEIF3L") SRP041162 SRS591824 SRX516775 SRR1238027 12894933 12894933 1 FALSE FALSE 12893109 653882735 colon hct 2014-04-14T17:27:07.543 2014-07-08T00:44:11.090 2014-07-08T01:23:22.560 51 GSM1369084 SRR1238027.bw siGLI1 rep2 c("cell line: vorinostat-resistant HCT116", "treatment: siGLI1") SRP041162 SRS591825 SRX516776 SRR1238028 17277237 17277237 1 FALSE FALSE 17274657 876970753 colon hct 2014-04-14T17:27:12.563 2014-07-08T00:44:11.147 2014-07-08T01:23:23.017 51 GSM1369085 SRR1238028.bw siJAK2 rep2 c("cell line: vorinostat-resistant HCT116", "treatment: siJAK2") SRP041162 SRS591826 SRX516777 SRR1238029 12507227 12507227 1 FALSE FALSE 12505154 634737009 colon hct 2014-04-14T17:27:25.163 2014-07-08T00:44:11.287 2014-07-08T01:23:23.410 51 GSM1369086 SRR1238029.bw siNFYA rep2 c("cell line: vorinostat-resistant HCT116", "treatment: siNFYA") SRP041162 SRS591827 SRX516778 SRR1238030 11349713 11349713 1 FALSE FALSE 11347907 575735390 colon hct 2014-04-14T17:27:22.713 2014-07-08T00:44:11.260 2014-07-08T01:23:23.740 51 GSM1369087 SRR1238030.bw siPOLR2D rep2 c("cell line: vorinostat-resistant HCT116", "treatment: siPOLR2D") SRP041162 SRS591828 SRX516779 SRR1238031 17420583 17420583 1 FALSE FALSE 17417778 884179430 colon hct 2014-04-14T17:27:17.780 2014-07-08T00:44:11.200 2014-07-08T01:23:24.210 51 GSM1369088 SRR1238031.bw siPSMD13 rep2 c("cell line: vorinostat-resistant HCT116", "treatment: siPSMD13") SRP041162 SRS591829 SRX516780 SRR1238032 12445946 12445946 1 FALSE FALSE 12442745 631522590 colon hct 2014-04-14T17:27:40.200 2014-07-08T00:44:11.453 2014-07-08T01:23:24.643 51 GSM1369089 SRR1238032.bw siRGS18 rep2 c("cell line: vorinostat-resistant HCT116", "treatment: siRGS18") SRP041162 SRS591830 SRX516781 SRR1238033 14235470 14235470 1 FALSE FALSE 14233292 722115900 colon hct 2014-04-14T17:27:27.683 2014-07-08T00:44:11.320 2014-07-08T01:23:25.100 51 GSM1369090 SRR1238033.bw siSAP130 rep2 c("cell line: vorinostat-resistant HCT116", "treatment: siSAP130") SRP041162 SRS591831 SRX516782 SRR1238034 13362627 13362627 1 FALSE FALSE 13360565 677851192 colon hct 2014-04-14T17:28:00.613 2014-07-08T00:44:11.590 2014-07-08T01:23:25.577 51 GSM1369091 SRR1238034.bw siTGM5 rep2 c("cell line: vorinostat-resistant HCT116", "treatment: siTGM5") SRP041162 SRS591832 SRX516783 SRR1238035 13970706 13970706 1 FALSE FALSE 13967034 708884979 colon hct 2014-04-14T17:27:58.550 2014-07-08T00:44:11.563 2014-07-08T01:23:26.060 51 GSM1369092 SRR1238035.bw siTOX4 rep2 c("cell line: vorinostat-resistant HCT116", "treatment: siTOX4") SRP041162 SRS591833 SRX516784 SRR1238036 11168125 11168125 1 FALSE FALSE 11166413 566066598 colon hct 2014-04-14T17:27:37.640 2014-07-08T00:44:11.427 2014-07-08T01:23:26.480 51 GSM1369093 SRR1238036.bw mock rep3 c("cell line: vorinostat-resistant HCT116", "treatment: mock") SRP041162 SRS591834 SRX516785 SRR1238037 23372015 23372015 1 FALSE FALSE 23368083 1186226247 colon hct 2014-04-14T17:27:53.603 2014-07-08T00:44:11.480 2014-07-08T01:23:26.887 51 GSM1369094 SRR1238037.bw siBEGAIN rep3 c("cell line: vorinostat-resistant HCT116", "treatment: siBEGAIN") SRP041162 SRS591835 SRX516786 SRR1238038 17367956 17367956 1 FALSE FALSE 17363562 881235857 colon hct 2014-04-14T17:27:55.747 2014-07-08T00:44:11.510 2014-07-08T01:23:27.347 51 GSM1369095 SRR1238038.bw siCCNK rep3 c("cell line: vorinostat-resistant HCT116", "treatment: siCCNK") SRP041162 SRS591836 SRX516787 SRR1238039 15621563 15621563 1 FALSE FALSE 15618964 792889854 colon hct 2014-04-14T17:27:30.157 2014-07-08T00:44:11.347 2014-07-08T01:23:27.723 51 GSM1369096 SRR1238039.bw siCDK10 rep3 c("cell line: vorinostat-resistant HCT116", "treatment: siCDK10") SRP041162 SRS591837 SRX516788 SRR1238040 14589712 14589712 1 FALSE FALSE 14587446 740077088 colon hct 2014-04-14T17:27:57.220 2014-07-08T00:44:11.533 2014-07-08T01:23:28.127 51 GSM1369097 SRR1238040.bw siDPPA5 rep3 c("cell line: vorinostat-resistant HCT116", "treatment: siDPPA5") SRP041162 SRS591838 SRX516789 SRR1238041 14106493 14106493 1 FALSE FALSE 14104516 715337059 colon hct 2014-04-14T17:27:32.697 2014-07-08T00:44:11.373 2014-07-08T01:23:28.643 51 GSM1369098 SRR1238041.bw siEIF3L rep3 c("cell line: vorinostat-resistant HCT116", "treatment: siEIF3L") SRP041162 SRS591839 SRX516790 SRR1238042 9756110 9756110 1 FALSE FALSE 9754704 494655427 colon hct 2014-04-14T17:27:35.210 2014-07-08T00:44:11.400 2014-07-08T01:23:29.137 51 GSM1369099 SRR1238042.bw siGLI1 rep3 c("cell line: vorinostat-resistant HCT116", "treatment: siGLI1") SRP041162 SRS591840 SRX516791 SRR1238043 15299261 15299261 1 FALSE FALSE 15296831 776549743 colon hct 2014-04-14T17:28:06.470 2014-07-08T00:44:11.697 2014-07-08T01:23:29.770 51 GSM1369100 SRR1238043.bw siJAK2 rep3 c("cell line: vorinostat-resistant HCT116", "treatment: siJAK2") SRP041162 SRS591841 SRX516792 SRR1238044 11219308 11219308 1 FALSE FALSE 11217654 568795537 colon hct 2014-04-14T17:28:03.723 2014-07-08T00:44:11.643 2014-07-08T01:27:14.407 51 GSM1369101 SRR1238044.bw siNFYA rep3 c("cell line: vorinostat-resistant HCT116", "treatment: siNFYA") SRP041162 SRS591842 SRX516793 SRR1238045 15782493 15782493 1 FALSE FALSE 15779800 801005704 colon hct 2014-04-14T17:28:05.093 2014-07-08T00:44:11.670 2014-07-08T01:27:14.933 51 GSM1369102 SRR1238045.bw siPOLR2D rep3 c("cell line: vorinostat-resistant HCT116", "treatment: siPOLR2D") SRP041162 SRS591843 SRX516794 SRR1238046 12804888 12804888 1 FALSE FALSE 12803125 649318694 colon hct 2014-04-14T17:28:02.150 2014-07-08T00:44:11.617 2014-07-08T01:27:15.257 51 GSM1369103 SRR1238046.bw siPSMD13 rep3 c("cell line: vorinostat-resistant HCT116", "treatment: siPSMD13") SRP041162 SRS591844 SRX516795 SRR1238047 12792707 12792707 1 FALSE FALSE 12790794 648659650 colon hct 2014-04-14T17:28:11.937 2014-07-08T00:44:11.803 2014-07-08T01:27:15.690 51 GSM1369104 SRR1238047.bw siRGS18 rep3 c("cell line: vorinostat-resistant HCT116", "treatment: siRGS18") SRP041162 SRS591845 SRX516796 SRR1238048 18050180 18050180 1 FALSE FALSE 18047320 915703253 colon hct 2014-04-14T17:28:07.813 2014-07-08T00:44:11.723 2014-07-08T01:27:16.107 51 GSM1369105 SRR1238048.bw siSAP130 rep3 c("cell line: vorinostat-resistant HCT116", "treatment: siSAP130") SRP041162 SRS591846 SRX516797 SRR1238049 12923634 12923634 1 FALSE FALSE 12921493 655864956 colon hct 2014-04-14T17:28:10.590 2014-07-08T00:44:11.777 2014-07-08T01:27:16.553 51 GSM1369106 SRR1238049.bw siTGM5 rep3 c("cell line: vorinostat-resistant HCT116", "treatment: siTGM5") SRP041162 SRS591847 SRX516798 SRR1238050 17513707 17513707 1 FALSE FALSE 17509163 888670271 colon hct 2014-04-14T17:28:09.173 2014-07-08T00:44:11.750 2014-07-08T01:27:17.047 51 GSM1369107 SRR1238050.bw siTOX4 rep3 c("cell line: vorinostat-resistant HCT116", "treatment: siTOX4")