project	sample	experiment	run	read_count_as_reported_by_sra	reads_downloaded	proportion_of_reads_reported_by_sra_downloaded	paired_end	sra_misreported_paired_end	mapped_read_count	auc	sharq_beta_tissue	sharq_beta_cell_type	biosample_submission_date	biosample_publication_date	biosample_update_date	avg_read_length	geo_accession	bigwig_file	title	characteristics
SRP042402	SRS622696	SRX555606	SRR1302899	18841654	18841654	1	FALSE	FALSE	18420891	901469332	NA	NA	2014-05-29T20:41:16.210	2014-12-01T00:44:23.817	2015-02-27T02:09:58.170	50	GSM1400916	SRR1302899.bw	GFPsh1	c("cell line: HCT116", "cell type: human colon cancer cell", "genotype/variation: GFP (non-targeting) control", "shRNA: GCAAGCTGACCCTGAAGTTCA", "molecule subtype: Ribosomal RNA-depleted total RNA")
SRP042402	SRS622696	SRX555606	SRR1302900	18627056	18627056	1	FALSE	FALSE	18215292	891493376	NA	NA	2014-05-29T20:41:16.210	2014-12-01T00:44:23.817	2015-02-27T02:09:58.170	50	GSM1400916	SRR1302900.bw	GFPsh1	c("cell line: HCT116", "cell type: human colon cancer cell", "genotype/variation: GFP (non-targeting) control", "shRNA: GCAAGCTGACCCTGAAGTTCA", "molecule subtype: Ribosomal RNA-depleted total RNA")
SRP042402	SRS622697	SRX555607	SRR1302901	47675654	47675654	1	FALSE	FALSE	46466194	2275506238	NA	NA	2014-05-29T20:41:20.807	2014-12-01T00:44:23.950	2015-02-27T02:09:57.193	50	GSM1400917	SRR1302901.bw	GFPsh2	c("cell line: HCT116", "cell type: human colon cancer cell", "genotype/variation: GFP (non-targeting) control", "shRNA: GCAAGCTGACCCTGAAGTTCA", "molecule subtype: Ribosomal RNA-depleted total RNA")
SRP042402	SRS622697	SRX555607	SRR1302902	47045824	47045824	1	FALSE	FALSE	45859598	2245709188	NA	NA	2014-05-29T20:41:20.807	2014-12-01T00:44:23.950	2015-02-27T02:09:57.193	50	GSM1400917	SRR1302902.bw	GFPsh2	c("cell line: HCT116", "cell type: human colon cancer cell", "genotype/variation: GFP (non-targeting) control", "shRNA: GCAAGCTGACCCTGAAGTTCA", "molecule subtype: Ribosomal RNA-depleted total RNA")
SRP042402	SRS622698	SRX555608	SRR1302903	32159265	32159265	1	FALSE	FALSE	31350197	1534963747	NA	NA	2014-05-29T20:41:08.903	2014-12-01T00:44:23.613	2015-02-27T02:09:56.443	50	GSM1400918	SRR1302903.bw	CDK9sh1	c("cell line: HCT116", "cell type: human colon cancer cell", "genotype/variation: CDK9 knockdown", "shRNA: CTACTACATCCACAGAAACAA", "molecule subtype: Ribosomal RNA-depleted total RNA")
SRP042402	SRS622698	SRX555608	SRR1302904	31824828	31824828	1	FALSE	FALSE	31026998	1519110911	NA	NA	2014-05-29T20:41:08.903	2014-12-01T00:44:23.613	2015-02-27T02:09:56.443	50	GSM1400918	SRR1302904.bw	CDK9sh1	c("cell line: HCT116", "cell type: human colon cancer cell", "genotype/variation: CDK9 knockdown", "shRNA: CTACTACATCCACAGAAACAA", "molecule subtype: Ribosomal RNA-depleted total RNA")
SRP042402	SRS622699	SRX555609	SRR1302905	31080060	31080060	1	FALSE	FALSE	30382093	1487076035	NA	NA	2014-05-29T20:41:18.377	2014-12-01T00:44:23.913	2015-02-27T02:09:55.723	50	GSM1400919	SRR1302905.bw	CDK9sh2	c("cell line: HCT116", "cell type: human colon cancer cell", "genotype/variation: CDK9 knockdown", "shRNA: TGATTGAGATTTGTCGAACCA", "molecule subtype: Ribosomal RNA-depleted total RNA")
SRP042402	SRS622699	SRX555609	SRR1302906	30674857	30674857	1	FALSE	FALSE	29990552	1467976345	NA	NA	2014-05-29T20:41:18.377	2014-12-01T00:44:23.913	2015-02-27T02:09:55.723	50	GSM1400919	SRR1302906.bw	CDK9sh2	c("cell line: HCT116", "cell type: human colon cancer cell", "genotype/variation: CDK9 knockdown", "shRNA: TGATTGAGATTTGTCGAACCA", "molecule subtype: Ribosomal RNA-depleted total RNA")
SRP042402	SRS622700	SRX555610	SRR1302907	14043371	14043371	1	FALSE	FALSE	13655418	669081205	NA	NA	2014-05-29T20:41:31.983	2014-12-01T00:44:24.013	2015-02-27T02:09:55.010	50	GSM1400920	SRR1302907.bw	CDK12sh1	c("cell line: HCT116", "cell type: human colon cancer cell", "genotype/variation: CDK12 knockdown", "shRNA: TTCAGAGTTATAGAGCCGAGC", "molecule subtype: Ribosomal RNA-depleted total RNA")
SRP042402	SRS622700	SRX555610	SRR1302908	13861552	13861552	1	FALSE	FALSE	13480977	660515733	NA	NA	2014-05-29T20:41:31.983	2014-12-01T00:44:24.013	2015-02-27T02:09:55.010	50	GSM1400920	SRR1302908.bw	CDK12sh1	c("cell line: HCT116", "cell type: human colon cancer cell", "genotype/variation: CDK12 knockdown", "shRNA: TTCAGAGTTATAGAGCCGAGC", "molecule subtype: Ribosomal RNA-depleted total RNA")
SRP042402	SRS622701	SRX555611	SRR1302909	25397322	25397322	1	FALSE	FALSE	24695067	1209222662	NA	NA	2014-05-29T20:41:11.773	2014-12-01T00:44:23.743	2015-02-27T02:09:53.930	50	GSM1400921	SRR1302909.bw	CDK12sh2	c("cell line: HCT116", "cell type: human colon cancer cell", "genotype/variation: CDK12 knockdown", "shRNA: AACAATCTCCTCTTTCAGTGC", "molecule subtype: Ribosomal RNA-depleted total RNA")
SRP042402	SRS622701	SRX555611	SRR1302910	25048221	25048221	1	FALSE	FALSE	24361596	1192988367	NA	NA	2014-05-29T20:41:11.773	2014-12-01T00:44:23.743	2015-02-27T02:09:53.930	50	GSM1400921	SRR1302910.bw	CDK12sh2	c("cell line: HCT116", "cell type: human colon cancer cell", "genotype/variation: CDK12 knockdown", "shRNA: AACAATCTCCTCTTTCAGTGC", "molecule subtype: Ribosomal RNA-depleted total RNA")
SRP042402	SRS622702	SRX555613	SRR1302913	15323596	15323596	1	FALSE	FALSE	14982259	733406917	NA	NA	2014-05-29T20:41:13.950	2014-12-01T00:44:23.780	2015-02-27T02:09:52.053	50	GSM1400923	SRR1302913.bw	CDK13sh2	c("cell line: HCT116", "cell type: human colon cancer cell", "genotype/variation: CDK13 knockdown", "shRNA: TAAATCAGCAAGAAGACATCG", "molecule subtype: Ribosomal RNA-depleted total RNA")
SRP042402	SRS622702	SRX555613	SRR1302914	15133192	15133192	1	FALSE	FALSE	14799297	724434100	NA	NA	2014-05-29T20:41:13.950	2014-12-01T00:44:23.780	2015-02-27T02:09:52.053	50	GSM1400923	SRR1302914.bw	CDK13sh2	c("cell line: HCT116", "cell type: human colon cancer cell", "genotype/variation: CDK13 knockdown", "shRNA: TAAATCAGCAAGAAGACATCG", "molecule subtype: Ribosomal RNA-depleted total RNA")
SRP042402	SRS622703	SRX555612	SRR1302911	10639974	10639974	1	FALSE	FALSE	10379036	508060897	NA	NA	2014-05-29T20:41:23.037	2014-12-01T00:44:23.980	2015-02-27T02:11:52.390	50	GSM1400922	SRR1302911.bw	CDK13sh1	c("cell line: HCT116", "cell type: human colon cancer cell", "genotype/variation: CDK13 knockdown", "shRNA: ATCAGCTTCTTTATCTTCAGG", "molecule subtype: Ribosomal RNA-depleted total RNA")
SRP042402	SRS622703	SRX555612	SRR1302912	10437707	10437707	1	FALSE	FALSE	10183995	498497388	NA	NA	2014-05-29T20:41:23.037	2014-12-01T00:44:23.980	2015-02-27T02:11:52.390	50	GSM1400922	SRR1302912.bw	CDK13sh1	c("cell line: HCT116", "cell type: human colon cancer cell", "genotype/variation: CDK13 knockdown", "shRNA: ATCAGCTTCTTTATCTTCAGG", "molecule subtype: Ribosomal RNA-depleted total RNA")