project sample experiment run read_count_as_reported_by_sra reads_downloaded proportion_of_reads_reported_by_sra_downloaded paired_end sra_misreported_paired_end mapped_read_count auc sharq_beta_tissue sharq_beta_cell_type biosample_submission_date biosample_publication_date biosample_update_date avg_read_length geo_accession bigwig_file title characteristics SRP047082 SRS700521 SRX700336 SRR1574511 51380022 51380022 1 TRUE FALSE 49914337 4389729696 NA NA 2014-09-12T15:16:13.337 2015-07-17T01:13:28.050 2015-07-17T01:19:29.900 200 GSM1503677 SRR1574511.bw Sample1_Leigh_fib1 c("cell type: Fibroblast", "cell line: Tissue", "sequenced molecule: polyA RNA") SRP047082 SRS700522 SRX700338 SRR1574513 42574500 42574500 1 TRUE FALSE 41334037 4039083213 NA NA 2014-09-12T15:16:18.050 2015-07-17T01:13:30.583 2015-07-17T01:19:29.550 200 GSM1503679 SRR1574513.bw Sample3_Leigh_iPS1_1 c("cell type: Human Pluripotent Stem Cell", "cell line: Sendai-Virus Derived", "sequenced molecule: polyA RNA") SRP047082 SRS700523 SRX700340 SRR1574515 45064360 45064360 1 TRUE FALSE 44445276 4339367131 NA NA 2014-09-12T15:16:31.383 2015-07-17T01:13:32.400 2015-07-17T01:19:29.180 200 GSM1503681 SRR1574515.bw Sample5_Leigh_iPS1_fib1 c("cell type: Fibroblast", "cell line: Differentated iPSC", "sequenced molecule: polyA RNA") SRP047082 SRS700524 SRX700341 SRR1574516 90784848 90784848 1 TRUE FALSE 89639996 8865429972 NA NA 2014-09-12T15:16:33.690 2015-07-17T01:13:33.383 2015-07-17T01:19:28.860 200 GSM1503682 SRR1574516.bw Sample6_Leigh_iPS1_fib2 c("cell type: Fibroblast", "cell line: Differentated iPSC", "sequenced molecule: polyA RNA") SRP047082 SRS700525 SRX700342 SRR1574517 77494384 77494384 1 TRUE FALSE 74176212 7226587928 NA NA 2014-09-12T15:16:36.060 2015-07-17T01:13:34.937 2015-07-17T01:19:28.540 200 GSM1503683 SRR1574517.bw Sample7_Leigh_NT_1 c("cell type: Human Pluripotent Stem Cell", "cell line: Nuclear Transfer Derived", "sequenced molecule: polyA RNA") SRP047082 SRS700526 SRX700337 SRR1574512 132134350 132134350 1 TRUE FALSE 130655914 12775631661 NA NA 2014-09-12T15:16:15.713 2015-07-17T01:13:29.687 2015-07-17T01:19:28.220 200 GSM1503678 SRR1574512.bw Sample2_Leigh_fib2 c("cell type: Fibroblast", "cell line: Tissue", "sequenced molecule: polyA RNA") SRP047082 SRS700527 SRX700343 SRR1574518 56756864 56756864 1 TRUE FALSE 52905478 4799018092 NA NA 2014-09-12T15:16:38.617 2015-07-17T01:13:36.123 2015-07-17T01:19:27.917 200 GSM1503684 SRR1574518.bw Sample8_Leigh_NT_2 c("cell type: Human Pluripotent Stem Cell", "cell line: Nuclear Transfer Derived", "sequenced molecule: polyA RNA") SRP047082 SRS700528 SRX700344 SRR1574519 47249958 47249958 1 TRUE FALSE 46750765 4589059630 NA NA 2014-09-12T15:16:50.963 2015-07-17T01:13:37.073 2015-07-17T01:19:27.567 200 GSM1503685 SRR1574519.bw Sample9_Leigh_NT_fib1 c("cell type: Fibroblast", "cell line: Differentiated NT-ESC", "sequenced molecule: polyA RNA") SRP047082 SRS700529 SRX700345 SRR1574520 66393722 66393722 1 TRUE FALSE 65768821 6433932469 NA NA 2014-09-12T15:16:53.443 2015-07-17T01:13:38.253 2015-07-17T01:19:27.267 200 GSM1503686 SRR1574520.bw Sample10_Leigh_NT_fib2 c("cell type: Fibroblast", "cell line: Differentiated NT-ESC", "sequenced molecule: polyA RNA") SRP047082 SRS700530 SRX700347 SRR1574522 70906880 70906880 1 TRUE FALSE 70033833 6414872997 NA NA 2014-09-12T15:16:58.100 2015-07-17T01:13:41.257 2015-07-17T01:19:26.943 200 GSM1503688 SRR1574522.bw Sample12_Melas_fib2 c("cell type: Human Dermal Fibroblast", "cell line: Tissue", "sequenced molecule: polyA RNA") SRP047082 SRS700531 SRX700348 SRR1574523 52294586 52294586 1 TRUE FALSE 50299517 4449652837 NA NA 2014-09-12T15:17:00.233 2015-07-17T01:13:42.443 2015-07-17T01:19:26.630 200 GSM1503689 SRR1574523.bw Sample13_Melas_iPS1_2 c("cell type: Human Pluripotent Stem Cell", "cell line: Sendai-Virus Derived", "sequenced molecule: polyA RNA") SRP047082 SRS700532 SRX700346 SRR1574521 42212476 42212476 1 TRUE FALSE 41505614 3789272289 NA NA 2014-09-12T15:16:55.833 2015-07-17T01:13:39.973 2015-07-17T01:19:26.320 200 GSM1503687 SRR1574521.bw Sample11_Melas_fib1 c("cell type: Human Dermal Fibroblast", "cell line: Tissue", "sequenced molecule: polyA RNA") SRP047082 SRS700533 SRX700349 SRR1574524 74883238 74883238 1 TRUE FALSE 74201570 7278393359 NA NA 2014-09-12T15:17:02.443 2015-07-17T01:13:43.600 2015-07-17T01:19:25.990 200 GSM1503690 SRR1574524.bw Sample14_Melas_iPS1_fib1 c("cell type: Fibroblast", "cell line: Differentated iPSC", "sequenced molecule: polyA RNA") SRP047082 SRS700534 SRX700351 SRR1574526 53603074 53603074 1 TRUE FALSE 52202671 4733436176 NA NA 2014-09-12T15:17:06.963 2015-07-17T01:13:45.967 2015-07-17T01:19:25.680 200 GSM1503692 SRR1574526.bw Sample16_Melas_iPS2_1 c("cell type: Human Pluripotent Stem Cell", "cell line: Sendai-Virus Derived", "sequenced molecule: polyA RNA") SRP047082 SRS700535 SRX700350 SRR1574525 55161318 55161318 1 TRUE FALSE 53703854 4684972093 NA NA 2014-09-12T15:17:04.707 2015-07-17T01:13:44.740 2015-07-17T01:19:25.360 200 GSM1503691 SRR1574525.bw Sample15_Melas_iPS1_fib2 c("cell type: Fibroblast", "cell line: Differentated iPSC", "sequenced molecule: polyA RNA") SRP047082 SRS700536 SRX700352 SRR1574527 86048838 86048838 1 TRUE FALSE 82462150 7498179077 NA NA 2014-09-12T15:17:18.417 2015-07-17T01:13:47.217 2015-07-17T01:19:25.053 200 GSM1503693 SRR1574527.bw Sample17_Melas_iPS2_2 c("cell type: Human Pluripotent Stem Cell", "cell line: Sendai-Virus Derived", "sequenced molecule: polyA RNA") SRP047082 SRS700537 SRX700354 SRR1574529 46917742 46917742 1 TRUE FALSE 46461221 4242746234 NA NA 2014-09-12T15:17:23.157 2015-07-17T01:13:49.400 2015-07-17T01:19:24.743 200 GSM1503695 SRR1574529.bw Sample19_Melas_iPS2_fib2 c("cell type: Fibroblast", "cell line: Differentated iPSC", "sequenced molecule: polyA RNA") SRP047082 SRS700538 SRX700353 SRR1574528 51683504 51683504 1 TRUE FALSE 51360712 4762116811 NA NA 2014-09-12T15:17:20.890 2015-07-17T01:13:48.433 2015-07-17T01:19:24.440 200 GSM1503694 SRR1574528.bw Sample18_Melas_iPS2_fib1 c("cell type: Fibroblast", "cell line: Differentated iPSC", "sequenced molecule: polyA RNA") SRP047082 SRS700539 SRX700355 SRR1574530 53931026 53931026 1 TRUE FALSE 52850846 5224285795 NA NA 2014-09-12T15:17:25.630 2015-07-17T01:13:50.617 2015-07-17T01:19:24.157 200 GSM1503696 SRR1574530.bw GSM1282324_hESO7 c("cell type: Human Pluripotent Stem Cell", "cell line: IVF Derived", "sequenced molecule: polyA RNA") SRP047082 SRS700540 SRX700356 SRR1574531 46474860 46474860 1 TRUE FALSE 44832470 4431536466 NA NA 2014-09-12T15:17:27.797 2015-07-17T01:13:51.617 2015-07-17T01:19:23.873 200 GSM1503697 SRR1574531.bw GSM1282325_hESO8 c("cell type: Human Pluripotent Stem Cell", "cell line: IVF Derived", "sequenced molecule: polyA RNA") SRP047082 SRS700541 SRX700357 SRR1574532 34797884 34797884 1 TRUE FALSE 34117213 3375550573 NA NA 2014-09-12T15:17:29.997 2015-07-17T01:13:52.573 2015-07-17T01:19:23.560 200 GSM1503698 SRR1574532.bw GSM1378018_hESO7_2 c("cell type: Human Pluripotent Stem Cell", "cell line: IVF Derived", "sequenced molecule: polyA RNA") SRP047082 SRS700542 SRX700358 SRR1574533 37310650 37310650 1 TRUE FALSE 36504768 3612385612 NA NA 2014-09-12T15:17:32.150 2015-07-17T01:13:53.513 2015-07-17T01:19:23.183 200 GSM1503699 SRR1574533.bw GSM1378019_hESO8_2 c("cell type: Human Pluripotent Stem Cell", "cell line: IVF Derived", "sequenced molecule: polyA RNA") SRP047082 SRS700543 SRX700339 SRR1574514 51282092 51282092 1 TRUE FALSE 48928090 4304916199 NA NA 2014-09-12T15:16:28.870 2015-07-17T01:13:31.543 2015-07-17T01:19:22.833 200 GSM1503680 SRR1574514.bw Sample4_Leigh_iPS1_2 c("cell type: Human Pluripotent Stem Cell", "cell line: Sendai-Virus Derived", "sequenced molecule: polyA RNA") SRP047082 SRS843813 SRX873947 SRR1799891 44586772 44586772 1 TRUE FALSE 44492125 4407058311 NA NA 2015-02-11T15:31:32.313 2015-07-17T01:14:16.137 2015-07-17T01:19:20.047 200 GSM1608020 SRR1799891.bw Sample35_NT2_fib2 c("cell type: Fibroblast", "cell line: Differentiated NT-ESC", "sequenced molecule: polyA RNA") SRP047082 SRS843814 SRX873945 SRR1799889 49497326 49497326 1 TRUE FALSE 49022361 4826805612 NA NA 2015-02-11T15:31:30.010 2015-07-17T01:14:25.157 2015-07-17T01:19:19.783 200 GSM1608018 SRR1799889.bw Sample33_NT1_fib2 c("cell type: Fibroblast", "cell line: Differentiated NT-ESC", "sequenced molecule: polyA RNA") SRP047082 SRS843815 SRX873944 SRR1799888 46372176 46372176 1 TRUE FALSE 45946958 4545545879 NA NA 2015-02-11T15:31:24.973 2015-07-17T01:14:24.183 2015-07-17T01:19:19.523 200 GSM1608017 SRR1799888.bw Sample32_NT1_fib1 c("cell type: Fibroblast", "cell line: Differentiated NT-ESC", "sequenced molecule: polyA RNA") SRP047082 SRS843816 SRX873946 SRR1799890 45581170 45581170 1 TRUE FALSE 45486183 4509264428 NA NA 2015-02-11T15:31:27.563 2015-07-17T01:14:14.683 2015-07-17T01:19:19.313 200 GSM1608019 SRR1799890.bw Sample34_NT2_fib1 c("cell type: Fibroblast", "cell line: Differentiated NT-ESC", "sequenced molecule: polyA RNA") SRP047082 SRS843817 SRX873942 SRR1799886 40272142 40272142 1 TRUE FALSE 40167639 3965178273 NA NA 2015-02-11T15:30:45.870 2015-07-17T01:14:21.677 2015-07-17T01:19:19.127 200 GSM1608015 SRR1799886.bw Sample30_Melas_iPS4_fib1 c("cell type: Fibroblast", "cell line: Differentated iPSC", "sequenced molecule: polyA RNA") SRP047082 SRS843818 SRX873941 SRR1799885 44720388 44720388 1 TRUE FALSE 41194189 3959639704 NA NA 2015-02-11T15:30:36.520 2015-07-17T01:14:29.277 2015-07-17T01:19:18.910 200 GSM1608014 SRR1799885.bw Sample29_Melas_iPS3_fib2 c("cell type: Fibroblast", "cell line: Differentated iPSC", "sequenced molecule: polyA RNA") SRP047082 SRS843819 SRX873943 SRR1799887 44245688 44245688 1 TRUE FALSE 44115863 4364475470 NA NA 2015-02-11T15:31:34.790 2015-07-17T01:14:22.777 2015-07-17T01:19:18.673 200 GSM1608016 SRR1799887.bw Sample31_Melas_iPS4_fib2 c("cell type: Fibroblast", "cell line: Differentated iPSC", "sequenced molecule: polyA RNA") SRP047082 SRS843820 SRX873938 SRR1799882 43892400 43892400 1 TRUE FALSE 43656579 4305760694 NA NA 2015-02-11T15:30:52.720 2015-07-17T01:14:13.507 2015-07-17T01:19:18.417 200 GSM1608011 SRR1799882.bw Sample26_Leigh_iPS3_fib1 c("cell type: Fibroblast", "cell line: Differentated iPSC", "sequenced molecule: polyA RNA") SRP047082 SRS843821 SRX873939 SRR1799883 47390082 47390082 1 TRUE FALSE 47144264 4672614912 NA NA 2015-02-11T15:30:48.263 2015-07-17T01:14:26.443 2015-07-17T01:19:18.167 200 GSM1608012 SRR1799883.bw Sample27_Leigh_iPS3_fib2 c("cell type: Fibroblast", "cell line: Differentated iPSC", "sequenced molecule: polyA RNA") SRP047082 SRS843822 SRX873940 SRR1799884 45656316 45656316 1 TRUE FALSE 42101258 4094676484 NA NA 2015-02-11T15:30:40.973 2015-07-17T01:14:27.703 2015-07-17T01:19:17.940 200 GSM1608013 SRR1799884.bw Sample28_Melas_iPS3_fib1 c("cell type: Fibroblast", "cell line: Differentated iPSC", "sequenced molecule: polyA RNA") SRP047082 SRS843823 SRX873936 SRR1799880 39276972 39276972 1 TRUE FALSE 39068651 3860532402 NA NA 2015-02-11T15:30:34.223 2015-07-17T01:14:11.237 2015-07-17T01:19:17.690 200 GSM1608009 SRR1799880.bw Sample24_Leigh_iPS2_fib1 c("cell type: Fibroblast", "cell line: Differentated iPSC", "sequenced molecule: polyA RNA") SRP047082 SRS843824 SRX873937 SRR1799881 47774398 47774398 1 TRUE FALSE 47556902 4659807994 NA NA 2015-02-11T15:30:38.770 2015-07-17T01:14:12.473 2015-07-17T01:19:17.503 200 GSM1608010 SRR1799881.bw Sample25_Leigh_iPS2_fib2 c("cell type: Fibroblast", "cell line: Differentated iPSC", "sequenced molecule: polyA RNA") SRP047082 SRS843825 SRX873935 SRR1799879 48502428 48502428 1 TRUE FALSE 48381819 4783237256 NA NA 2015-02-11T15:30:55.227 2015-07-17T01:14:10.233 2015-07-17T01:19:17.300 200 GSM1608008 SRR1799879.bw Sample23_hESO_8_fib2 c("cell type: Fibroblast", "cell line: Differentiated IVF-ESC", "sequenced molecule: polyA RNA") SRP047082 SRS843826 SRX873934 SRR1799878 46014000 46014000 1 TRUE FALSE 45906858 4537469560 NA NA 2015-02-11T15:30:50.530 2015-07-17T01:14:08.983 2015-07-17T01:19:17.073 200 GSM1608007 SRR1799878.bw Sample22_hESO_8_fib1 c("cell type: Fibroblast", "cell line: Differentiated IVF-ESC", "sequenced molecule: polyA RNA") SRP047082 SRS843827 SRX873933 SRR1799877 42252728 42252728 1 TRUE FALSE 42171177 4151213713 NA NA 2015-02-11T15:30:57.970 2015-07-17T01:14:07.877 2015-07-17T01:19:16.813 200 GSM1608006 SRR1799877.bw Sample21_hESO_7_fib2 c("cell type: Fibroblast", "cell line: Differentiated IVF-ESC", "sequenced molecule: polyA RNA") SRP047082 SRS843828 SRX873932 SRR1799876 45770758 45770758 1 TRUE FALSE 45636869 4469492700 NA NA 2015-02-11T15:30:43.390 2015-07-17T01:14:06.537 2015-07-17T01:19:16.513 200 GSM1608005 SRR1799876.bw Sample20_hESO_7_fib1 c("cell type: Fibroblast", "cell line: Differentiated IVF-ESC", "sequenced molecule: polyA RNA") SRP047082 SRS843904 SRX874252 SRR1800137 53586952 53586952 1 TRUE FALSE 52458644 5183538575 NA NA 2015-02-11T18:25:29.070 2015-07-17T01:14:18.927 2015-07-17T01:19:16.280 200 GSM1608065 SRR1800137.bw GSM1282321_NT2 c("cell type: Human Pluripotent Stem Cell", "cell line: Nuclear Transfer Derived", "sequenced molecule: polyA RNA") SRP047082 SRS843905 SRX874251 SRR1800136 58207886 58207886 1 TRUE FALSE 56788463 5621759638 NA NA 2015-02-11T18:25:26.810 2015-07-17T01:14:18.027 2015-07-17T01:19:16.057 200 GSM1608064 SRR1800136.bw GSM1378014_NT1_2 c("cell type: Human Pluripotent Stem Cell", "cell line: Nuclear Transfer Derived", "sequenced molecule: polyA RNA") SRP047082 SRS843906 SRX874253 SRR1800138 36841322 36841322 1 TRUE FALSE 36082247 3571396265 NA NA 2015-02-11T18:25:31.163 2015-07-17T01:14:20.150 2015-07-17T01:19:15.760 200 GSM1608066 SRR1800138.bw GSM1378015_NT2_2 c("cell type: Human Pluripotent Stem Cell", "cell line: Nuclear Transfer Derived", "sequenced molecule: polyA RNA") SRP047082 SRS843907 SRX874250 SRR1800135 46187000 46187000 1 TRUE FALSE 44917798 4430627523 NA NA 2015-02-11T18:20:32.943 2015-07-17T01:14:17.057 2015-07-17T01:19:15.423 200 GSM1608063 SRR1800135.bw GSM1282320_NT1 c("cell type: Human Pluripotent Stem Cell", "cell line: Nuclear Transfer Derived", "sequenced molecule: polyA RNA")