project sample experiment run read_count_as_reported_by_sra reads_downloaded proportion_of_reads_reported_by_sra_downloaded paired_end sra_misreported_paired_end mapped_read_count auc sharq_beta_tissue sharq_beta_cell_type biosample_submission_date biosample_publication_date biosample_update_date avg_read_length geo_accession bigwig_file title characteristics SRP055438 SRS853151 SRX886283 SRR1813899 41051310 41051310 1 TRUE FALSE 40177815 1917883553 NA NA 2015-02-23T14:03:49.680 2015-07-16T11:47:11.100 2015-07-16T11:53:56.180 96 GSM1616944 SRR1813899.bw Normal colon acquired during surgery for small intestine neuroendocrine tumor, female age 49 [RNA-Seq, 50_NIBD_NI] c("age: 49", "Sex: female", "disease: Normal, SI Neuroendocrine tumor", "disease_stage: NA", "inflamed: No", "montreal classification: NA") SRP055438 SRS853152 SRX886269 SRR1813885 43056444 43056444 1 TRUE FALSE 39999848 1911809051 NA NA 2015-02-23T14:01:42.430 2015-07-16T11:44:19.320 2015-07-16T11:49:30.487 96 GSM1616930 SRR1813885.bw B2/stricturing Crohn's disease [RNA-Seq, 440_CD_NI_B2] c("age: 76", "Sex: male", "disease: Crohn's Disease", "disease_stage: B2/stricturing", "inflamed: No", "montreal classification: A2L3B2") SRP055438 SRS853153 SRX886281 SRR1813897 25842084 25842084 1 TRUE FALSE 25486703 1215061573 NA NA 2015-02-23T14:02:38.637 2015-07-16T11:47:08.953 2015-07-16T11:53:55.757 96 GSM1616942 SRR1813897.bw Normal colon acquired during surgery for adenoma, male age 70 [RNA-Seq, 48_NIBD_NI] c("age: 70", "Sex: male", "disease: Normal, Adenoma", "disease_stage: NA", "inflamed: No", "montreal classification: NA") SRP055438 SRS853154 SRX886282 SRR1813898 39914786 39914786 1 TRUE FALSE 39000630 1861705228 NA NA 2015-02-23T14:02:49.880 2015-07-16T11:47:10.117 2015-07-16T11:53:55.350 96 GSM1616943 SRR1813898.bw Normal colon acquired during surgery for adenoma, male age 62 [RNA-Seq, 49_NIBD_NI] c("age: 62", "Sex: male", "disease: Normal, Adenoma", "disease_stage: NA", "inflamed: No", "montreal classification: NA") SRP055438 SRS853155 SRX886280 SRR1813896 56772952 56772952 1 TRUE FALSE 55962195 2670166606 NA NA 2015-02-23T14:03:14.387 2015-07-16T11:47:07.787 2015-07-16T11:53:54.670 96 GSM1616941 SRR1813896.bw Normal colon acquired during surgery for colonic inertia, female age 45 [RNA-Seq, 43_NIBD_NI] c("age: 45", "Sex: female", "disease: Normal, colonic inertia", "disease_stage: NA", "inflamed: No", "montreal classification: NA") SRP055438 SRS853156 SRX886278 SRR1813894 99482718 99482718 1 TRUE FALSE 98648933 4715925571 NA NA 2015-02-23T14:01:47.177 2015-07-16T11:47:04.913 2015-07-16T11:53:54.073 96 GSM1616939 SRR1813894.bw Normal colon acquired during surgery for colon cancer, male age 52 [RNA-Seq, 39_NIBD_NI] c("age: 52", "Sex: male", "disease: Normal, Colon cancer", "disease_stage: NA", "inflamed: No", "montreal classification: NA") SRP055438 SRS853157 SRX886279 SRR1813895 68987664 68987664 1 TRUE FALSE 68453191 3271672869 NA NA 2015-02-23T14:01:30.937 2015-07-16T11:47:06.797 2015-07-16T11:53:53.673 96 GSM1616940 SRR1813895.bw Normal colon acquired during surgery for large polyp, male age 65 [RNA-Seq, 42_NIBD_NI] c("age: 65", "Sex: male", "disease: Normal control, large polyp", "disease_stage: NA", "inflamed: No", "montreal classification: NA") SRP055438 SRS853158 SRX886277 SRR1813893 71171008 71171008 1 TRUE FALSE 69797641 3328721017 NA NA 2015-02-23T14:02:25.053 2015-07-16T11:47:03.997 2015-07-16T11:53:53.000 96 GSM1616938 SRR1813893.bw Normal colon acquired during surgery for colonic inertia, female age 41 [RNA-Seq, 36_NIBD_NI] c("age: 41", "Sex: female", "disease: Normal, colonic inertia, TI submucosal hemorrhage (but looked inflamed on macro)", "disease_stage: NA", "inflamed: No", "montreal classification: NA") SRP055438 SRS853159 SRX886276 SRR1813892 91151050 91151050 1 TRUE FALSE 88775518 4244402452 NA NA 2015-02-23T14:03:00.343 2015-07-16T11:47:02.287 2015-07-16T11:53:52.557 96 GSM1616937 SRR1813892.bw Normal colon acquired during surgery for colon cancer, male age 44 [RNA-Seq, 32_NIBD_NI] c("age: 44", "Sex: male", "disease: Normal, Colon cancer", "disease_stage: NA", "inflamed: No", "montreal classification: NA") SRP055438 SRS853160 SRX886274 SRR1813890 29621758 29621758 1 TRUE FALSE 29238249 1392851439 NA NA 2015-02-23T14:04:02.967 2015-07-16T11:44:24.743 2015-07-16T11:49:30.233 96 GSM1616935 SRR1813890.bw Normal colon acquired during surgery for diverticulitis, male age 70 [RNA-Seq, 27_NIBD_NI] c("age: 70", "Sex: male", "disease: Normal, diverticulitis", "disease_stage: NA", "inflamed: No", "montreal classification: NA") SRP055438 SRS853161 SRX886273 SRR1813889 65080726 65080726 1 TRUE FALSE 64454099 3081235321 NA NA 2015-02-23T14:02:55.093 2015-07-16T11:44:23.833 2015-07-16T11:49:29.993 96 GSM1616934 SRR1813889.bw Normal colon biopsy acquired during surgery for diverticulitis,female age 60 [RNA-Seq, 25_NIBD_NI] c("age: 60", "Sex: female", "disease: Normal, diverticulitis", "disease_stage: NA", "inflamed: No", "montreal classification: NA") SRP055438 SRS853163 SRX886275 SRR1813891 16890332 16890332 1 TRUE FALSE 16612917 793302122 NA NA 2015-02-23T14:02:44.033 2015-07-16T11:44:25.553 2015-07-16T11:49:29.627 96 GSM1616936 SRR1813891.bw Normal colon biopsy acquired during surgery for colon cancer, female age 82 [RNA-Seq, 30_NIBD_NI] c("age: 82", "Sex: female", "disease: Normal, Colon cancer", "disease_stage: NA", "inflamed: No", "montreal classification: NA") SRP055438 SRS853164 SRX886271 SRR1813887 30059992 30059992 1 TRUE FALSE 23572403 1119808285 NA NA 2015-02-23T14:03:28.193 2015-07-16T11:44:21.623 2015-07-16T11:49:29.323 96 GSM1616932 SRR1813887.bw Normal colon biopsy, female age 53 [RNA-Seq, 22_NIBD_NI] c("age: 53", "Sex: female", "disease: Normal", "disease_stage: NA", "inflamed: No", "montreal classification: NA") SRP055438 SRS853165 SRX886272 SRR1813888 152815870 152815870 1 TRUE FALSE 149424346 7136824702 NA NA 2015-02-23T14:03:05.143 2015-07-16T11:44:22.597 2015-07-16T11:49:29.067 96 GSM1616933 SRR1813888.bw Normal colon acquired during Hartmann reversal after colon cancer, male age 52 [RNA-Seq, 23_NIBD_NI] c("age: 52", "Sex: male", "disease: Normal, Hartmann reversal after colon cancer", "disease_stage: NA", "inflamed: No", "montreal classification: NA") SRP055438 SRS853166 SRX886270 SRR1813886 48304894 48304894 1 TRUE FALSE 47333273 2263808698 NA NA 2015-02-23T14:04:07.487 2015-07-16T11:44:20.343 2015-07-16T11:49:28.820 96 GSM1616931 SRR1813886.bw B3/penetrating Crohn's disease [RNA-Seq, 450_CD_NI_B3] c("age: 28", "Sex: female", "disease: Crohn's Disease", "disease_stage: B3/penetrating", "inflamed: No", "montreal classification: A2L1B3") SRP055438 SRS853167 SRX886268 SRR1813884 25728336 25728336 1 TRUE FALSE 25542515 1217610515 NA NA 2015-02-23T14:03:37.583 2015-07-16T11:44:18.113 2015-07-16T11:49:28.633 96 GSM1616929 SRR1813884.bw B3/penetrating Crohn's disease [RNA-Seq, 434_CD_NI_B3] c("age: 31", "Sex: male", "disease: Crohn's Disease", "disease_stage: B3/penetrating", "inflamed: No", "montreal classification: A2L3B3") SRP055438 SRS853168 SRX886266 SRR1813882 65217432 65217432 1 TRUE FALSE 64054586 3062219641 NA NA 2015-02-23T14:03:30.333 2015-07-16T11:44:15.877 2015-07-16T11:49:28.320 96 GSM1616927 SRR1813882.bw B1/non-strituring, non-penetrating Crohn's disease [RNA-Seq, 429_CD_NI_B1] c("age: 25", "Sex: female", "disease: Crohn's Disease", "disease_stage: B1/non-strictuing, non-penetrating", "inflamed: No", "montreal classification: A2L3B1") SRP055438 SRS853169 SRX886267 SRR1813883 43175966 43175966 1 TRUE FALSE 41994293 2008758659 NA NA 2015-02-23T14:01:35.663 2015-07-16T11:44:16.847 2015-07-16T11:49:28.100 96 GSM1616928 SRR1813883.bw B1/non-strituring, non-penetrating Crohn's disease [RNA-Seq, 431_CD_NI_B1] c("age: 20", "Sex: female", "disease: Crohn's Disease", "disease_stage: B1/non-strictuing, non-penetrating", "inflamed: No", "montreal classification: A1L2B1") SRP055438 SRS853170 SRX886265 SRR1813881 18489590 18489590 1 TRUE FALSE 18203931 865280684 NA NA 2015-02-23T14:03:35.243 2015-07-16T11:44:14.927 2015-07-16T11:49:27.863 96 GSM1616926 SRR1813881.bw B3/penetrating Crohn's disease [RNA-Seq, 424_CD_NI_B3] c("age: 34", "Sex: male", "disease: Crohn's Disease", "disease_stage: B3/penetrating", "inflamed: No", "montreal classification: A2L3B3") SRP055438 SRS853171 SRX886264 SRR1813880 46606248 46606248 1 TRUE FALSE 46094846 2205918976 NA NA 2015-02-23T14:03:25.957 2015-07-16T11:44:13.437 2015-07-16T11:49:27.580 96 GSM1616925 SRR1813880.bw B2/stricturing Crohn's disease [RNA-Seq, 422_CD_NI_B2] c("age: 21", "Sex: female", "disease: Crohn's Disease", "disease_stage: B2/stricturing", "inflamed: No", "montreal classification: A1L3B2") SRP055438 SRS853172 SRX886263 SRR1813879 54212144 54212144 1 TRUE FALSE 53643368 2556283059 NA NA 2015-02-23T14:03:21.210 2015-07-16T11:44:12.197 2015-07-16T11:49:27.387 96 GSM1616924 SRR1813879.bw B2/stricturing Crohn's disease [RNA-Seq, 420_CD_NI_B2] c("age: 37", "Sex: female", "disease: Crohn's Disease", "disease_stage: B2/stricturing", "inflamed: No", "montreal classification: A2L2B2p") SRP055438 SRS853173 SRX886261 SRR1813877 247485676 247485676 1 TRUE FALSE 243203487 11631095092 NA NA 2015-02-23T14:01:37.957 2015-07-16T11:44:09.853 2015-07-16T11:49:27.173 96 GSM1616922 SRR1813877.bw B1/non-strituring, non-penetrating Crohn's disease [RNA-Seq, 408_CD_NI_B1] c("age: 23", "Sex: female", "disease: Crohn's Disease", "disease_stage: B1/non-strictuing, non-penetrating", "inflamed: No", "montreal classification: A2L2B1") SRP055438 SRS853174 SRX886262 SRR1813878 42265882 42265882 1 TRUE FALSE 41405093 1981254119 NA NA 2015-02-23T14:02:14.950 2015-07-16T11:44:11.007 2015-07-16T11:49:26.937 96 GSM1616923 SRR1813878.bw B3/penetrating Crohn's disease [RNA-Seq, 413_CD_NI_B1] c("age: 32", "Sex: female", "disease: Crohn's Disease", "disease_stage: B3/penetrating", "inflamed: No", "montreal classification: A2L2B1") SRP055438 SRS853175 SRX886260 SRR1813876 44886634 44886634 1 TRUE FALSE 42830516 2048596136 NA NA 2015-02-23T14:02:34.270 2015-07-16T11:44:08.217 2015-07-16T11:49:26.753 96 GSM1616921 SRR1813876.bw B3/penetrating Crohn's disease [RNA-Seq, 407_CD_NI_B3] c("age: 43", "Sex: female", "disease: Crohn's Disease", "disease_stage: B3/penetrating", "inflamed: No", "montreal classification: A2L2B3p") SRP055438 SRS853176 SRX886259 SRR1813875 51021626 51021626 1 TRUE FALSE 47599612 2275945356 NA NA 2015-02-23T14:03:16.433 2015-07-16T11:44:06.733 2015-07-16T11:49:26.513 96 GSM1616920 SRR1813875.bw B1/non-strituring, non-penetrating Crohn's disease [RNA-Seq, 405_CD_NI_B1] c("age: 56", "Sex: female", "disease: Crohn's Disease", "disease_stage: B1/non-strictuing, non-penetrating", "inflamed: No", "montreal classification: A2L2B1") SRP055438 SRS853177 SRX886258 SRR1813874 61434072 61434072 1 TRUE FALSE 60281404 2870509608 NA NA 2015-02-23T14:01:40.127 2015-07-16T11:44:05.457 2015-07-16T11:49:26.260 96 GSM1616919 SRR1813874.bw B3/penetrating Crohn's disease [RNA-Seq, 64_CD_NI_B3] c("age: 49", "Sex: female", "disease: Crohn's Disease", "disease_stage: B3/penetrating", "inflamed: No", "montreal classification: A2L3B3") SRP055438 SRS853178 SRX886256 SRR1813872 55173450 55173450 1 TRUE FALSE 54628400 2612126069 NA NA 2015-02-23T14:03:54.113 2015-07-16T11:44:03.127 2015-07-16T11:49:26.077 96 GSM1616917 SRR1813872.bw B3/penetrating Crohn's disease [RNA-Seq, 62_CD_NI_B3] c("age: 45", "Sex: female", "disease: Crohn's Disease", "disease_stage: B3/penetrating", "inflamed: No", "montreal classification: A2L3B3") SRP055438 SRS853179 SRX886257 SRR1813873 70772708 70772708 1 TRUE FALSE 70058518 3349761756 NA NA 2015-02-23T14:03:07.480 2015-07-16T11:44:04.133 2015-07-16T11:49:25.717 96 GSM1616918 SRR1813873.bw B1/non-strituring, non-penetrating Crohn's disease [RNA-Seq, 63_CD_NI_B1] c("age: 49", "Sex: male", "disease: Crohn's Disease", "disease_stage: B1/non-strictuing, non-penetrating", "inflamed: No", "montreal classification: A1L3B1") SRP055438 SRS853180 SRX886255 SRR1813871 86399364 86399364 1 TRUE FALSE 85439460 4085101941 NA NA 2015-02-23T14:03:02.860 2015-07-16T11:44:01.650 2015-07-16T11:49:25.450 96 GSM1616916 SRR1813871.bw B1/non-strituring, non-penetrating Crohn's disease [RNA-Seq, 54_CD_NI_B1] c("age: 20", "Sex: male", "disease: Crohn's Disease", "disease_stage: B1/non-strictuing, non-penetrating", "inflamed: No", "montreal classification: A1L2B1") SRP055438 SRS853181 SRX886254 SRR1813870 81709420 81709420 1 TRUE FALSE 80874596 3863628959 NA NA 2015-02-23T14:01:54.063 2015-07-16T11:44:00.440 2015-07-16T11:49:25.197 96 GSM1616915 SRR1813870.bw B2/stricturing Crohn's disease [RNA-Seq, 51_CD_NI_B2] c("age: 30", "Sex: female", "disease: Crohn's Disease", "disease_stage: B2/stricturing", "inflamed: No", "montreal classification: A2L3B2") SRP055438 SRS853182 SRX886253 SRR1813869 28032484 28032484 1 TRUE FALSE 27111174 1295357485 NA NA 2015-02-23T14:04:00.710 2015-07-16T11:43:59.273 2015-07-16T11:49:24.860 96 GSM1616914 SRR1813869.bw B3/penetrating Crohn's disease [RNA-Seq, 29_CD_NI_B3] c("age: 59", "Sex: female", "disease: Crohn's Disease", "disease_stage: B3/penetrating", "inflamed: No", "montreal classification: A2L3B3") SRP055438 SRS853183 SRX886252 SRR1813868 21507234 21507234 1 TRUE FALSE 21187456 1010255729 NA NA 2015-02-23T14:03:39.823 2015-07-16T11:43:58.143 2015-07-16T11:49:24.530 96 GSM1616913 SRR1813868.bw B2/stricturing Crohn's disease [RNA-Seq, 21_CD_NI_B2] c("age: 51", "Sex: female", "disease: Crohn's Disease", "disease_stage: B2/stricturing", "inflamed: No", "montreal classification: A2L2B2") SRP055438 SRS853184 SRX886251 SRR1813867 13030858 13030858 1 TRUE FALSE 12876193 614409293 NA NA 2015-02-23T14:03:56.297 2015-07-16T11:43:56.103 2015-07-16T11:49:24.277 96 GSM1616912 SRR1813867.bw B2/stricturing Crohn's disease [RNA-Seq, 20_CD_NI_B2] c("age: 15", "Sex: male", "disease: Crohn's Disease", "disease_stage: B2/stricturing", "inflamed: No", "montreal classification: A1L1B2")