project sample experiment run read_count_as_reported_by_sra reads_downloaded proportion_of_reads_reported_by_sra_downloaded paired_end sra_misreported_paired_end mapped_read_count auc sharq_beta_tissue sharq_beta_cell_type biosample_submission_date biosample_publication_date biosample_update_date avg_read_length geo_accession bigwig_file title characteristics SRP056696 SRS888571 SRX973361 SRR1946675 183556118 183556118 1 TRUE FALSE 182973085 17598185877 NA NA 2015-03-30T14:47:16.630 2015-03-31T00:44:27.763 2015-03-31T01:34:33.973 200 GSM1646717 SRR1946675.bw HCC_347T c("tumor status: Tumor", "age: 41", "gender: M", "tissue: liver") SRP056696 SRS888572 SRX973377 SRR1946691 212427826 212427826 1 TRUE FALSE 210975844 20043534697 NA NA 2015-03-30T14:47:07.793 2015-03-31T00:44:27.640 2015-03-31T01:34:32.743 200 GSM1646733 SRR1946691.bw HCC_363T c("tumor status: Tumor", "age: 44", "gender: M", "tissue: liver") SRP056696 SRS888573 SRX973376 SRR1946690 154331870 154331870 1 TRUE FALSE 154047798 14875532487 NA NA 2015-03-30T14:46:41.363 2015-03-31T00:44:27.167 2015-03-31T01:38:24.393 200 GSM1646732 SRR1946690.bw HCC_362T c("tumor status: Tumor", "age: 36", "gender: M", "tissue: liver") SRP056696 SRS888574 SRX973375 SRR1946689 174105708 174105708 1 TRUE FALSE 172160168 16344322354 NA NA 2015-03-30T14:47:33.843 2015-03-31T00:44:28.010 2015-03-31T01:29:19.517 200 GSM1646731 SRR1946689.bw HCC_361T c("tumor status: Tumor", "age: 71", "gender: M", "tissue: liver") SRP056696 SRS888575 SRX973372 SRR1946686 160844052 160844052 1 TRUE FALSE 160342147 15656619315 NA NA 2015-03-30T14:46:46.090 2015-03-31T00:44:27.247 2015-03-31T01:29:15.937 200 GSM1646728 SRR1946686.bw HCC_358T c("tumor status: Tumor", "age: 55", "gender: F", "tissue: liver") SRP056696 SRS888576 SRX973371 SRR1946685 162044476 162044476 1 TRUE FALSE 161632847 15517618088 NA NA 2015-03-30T14:46:50.517 2015-03-31T00:44:27.363 2015-03-31T01:38:22.297 200 GSM1646727 SRR1946685.bw HCC_357T c("tumor status: Tumor", "age: 23", "gender: M", "tissue: liver") SRP056696 SRS888577 SRX973374 SRR1946688 139466566 139466566 1 TRUE FALSE 139348998 13539148889 NA NA 2015-03-30T14:46:57.753 2015-03-31T00:44:27.490 2015-03-31T01:38:19.730 200 GSM1646730 SRR1946688.bw HCC_360T c("tumor status: Tumor", "age: 0", "gender: M", "tissue: liver") SRP056696 SRS888578 SRX973370 SRR1946684 168371470 168371470 1 TRUE FALSE 167970535 16101787635 NA NA 2015-03-30T14:47:19.547 2015-03-31T00:44:27.800 2015-03-31T01:38:17.557 200 GSM1646726 SRR1946684.bw HCC_356T c("tumor status: Tumor", "age: 71", "gender: F", "tissue: liver") SRP056696 SRS888579 SRX973369 SRR1946683 163850950 163850950 1 TRUE FALSE 163380169 15807094776 NA NA 2015-03-30T14:46:32.543 2015-03-31T00:44:27.010 2015-03-31T01:29:11.850 200 GSM1646725 SRR1946683.bw HCC_355T c("tumor status: Tumor", "age: 56", "gender: M", "tissue: liver") SRP056696 SRS888580 SRX973368 SRR1946682 208222196 208222196 1 TRUE FALSE 206453699 18838142998 NA NA 2015-03-30T14:46:53.033 2015-03-31T00:44:27.420 2015-03-31T01:42:19.917 200 GSM1646724 SRR1946682.bw HCC_354T c("tumor status: Tumor", "age: 52", "gender: M", "tissue: liver") SRP056696 SRS888581 SRX973366 SRR1946680 149131472 149131472 1 TRUE FALSE 148661751 14223098241 NA NA 2015-03-30T14:48:20.710 2015-03-31T00:44:28.607 2015-03-31T01:29:09.147 200 GSM1646722 SRR1946680.bw HCC_352T c("tumor status: Tumor", "age: 62", "gender: M", "tissue: liver") SRP056696 SRS888582 SRX973367 SRR1946681 142526836 142526836 1 TRUE FALSE 142013291 13567058492 NA NA 2015-03-30T14:46:27.807 2015-03-31T00:44:26.947 2015-03-31T01:29:05.497 200 GSM1646723 SRR1946681.bw HCC_353T c("tumor status: Tumor", "age: 60", "gender: M", "tissue: liver") SRP056696 SRS888583 SRX973373 SRR1946687 124639188 124639188 1 TRUE FALSE 124397767 12278926100 NA NA 2015-03-30T14:47:37.063 2015-03-31T00:44:28.060 2015-03-31T01:29:02.360 200 GSM1646729 SRR1946687.bw HCC_359T c("tumor status: Tumor", "age: 67", "gender: F", "tissue: liver") SRP056696 SRS888584 SRX973365 SRR1946679 161659948 161659948 1 TRUE FALSE 160853397 14813499215 NA NA 2015-03-30T14:47:21.850 2015-03-31T00:44:27.843 2015-03-31T01:38:13.553 200 GSM1646721 SRR1946679.bw HCC_351T c("tumor status: Tumor", "age: 39", "gender: M", "tissue: liver") SRP056696 SRS888585 SRX973364 SRR1946678 155210930 155210930 1 TRUE FALSE 154979113 15121625367 NA NA 2015-03-30T14:46:21.187 2015-03-31T00:44:26.800 2015-03-31T01:29:00.293 200 GSM1646720 SRR1946678.bw HCC_350T c("tumor status: Tumor", "age: 74", "gender: M", "tissue: liver") SRP056696 SRS888586 SRX973362 SRR1946676 140028012 140028012 1 TRUE FALSE 139668677 13521069682 NA NA 2015-03-30T14:47:00.393 2015-03-31T00:44:27.530 2015-03-31T01:38:11.257 200 GSM1646718 SRR1946676.bw HCC_348T c("tumor status: Tumor", "age: 45", "gender: M", "tissue: liver") SRP056696 SRS888587 SRX973363 SRR1946677 132346440 132346440 1 TRUE FALSE 131967381 12468210195 NA NA 2015-03-30T14:47:41.887 2015-03-31T00:44:28.123 2015-03-31T01:34:31.943 200 GSM1646719 SRR1946677.bw HCC_349T c("tumor status: Tumor", "age: 39", "gender: M", "tissue: liver") SRP056696 SRS888589 SRX973358 SRR1946672 125943706 125943706 1 TRUE FALSE 125407605 12361132534 NA NA 2015-03-30T14:48:12.640 2015-03-31T00:44:28.487 2015-03-31T01:38:09.710 200 GSM1646714 SRR1946672.bw HCC_342T c("tumor status: Tumor", "age: 65", "gender: M", "tissue: liver") SRP056696 SRS888590 SRX973359 SRR1946673 160037192 160037192 1 TRUE FALSE 159293392 13516404073 NA NA 2015-03-30T14:46:43.513 2015-03-31T00:44:27.213 2015-03-31T01:38:08.097 200 GSM1646715 SRR1946673.bw HCC_345T c("tumor status: Tumor", "age: 43", "gender: M", "tissue: liver") SRP056696 SRS888591 SRX973357 SRR1946671 90043964 90043964 1 TRUE FALSE 89951396 8809565560 NA NA 2015-03-30T14:47:52.900 2015-03-31T00:44:28.273 2015-03-31T01:38:06.673 200 GSM1646713 SRR1946671.bw HCC_339T c("tumor status: Tumor", "age: 52", "gender: M", "tissue: liver") SRP056696 SRS888592 SRX973355 SRR1946669 136104548 136104548 1 TRUE FALSE 135865032 12972009403 NA NA 2015-03-30T14:47:04.993 2015-03-31T00:44:27.603 2015-03-31T01:37:59.363 200 GSM1646711 SRR1946669.bw HCC_336T c("tumor status: Tumor", "age: 49", "gender: M", "tissue: liver") SRP056696 SRS888593 SRX973354 SRR1946668 121053556 121053556 1 TRUE FALSE 120251946 11630658578 NA NA 2015-03-30T14:47:39.690 2015-03-31T00:44:28.090 2015-03-31T01:28:58.373 200 GSM1646710 SRR1946668.bw HCC_335T c("tumor status: Tumor", "age: 49", "gender: M", "tissue: liver") SRP056696 SRS888594 SRX973352 SRR1946666 120571262 120571262 1 TRUE FALSE 120286484 11495456739 NA NA 2015-03-30T14:47:44.947 2015-03-31T00:44:28.163 2015-03-31T01:37:51.530 200 GSM1646708 SRR1946666.bw HCC_333T c("tumor status: Tumor", "age: 66", "gender: M", "tissue: liver") SRP056696 SRS888595 SRX973353 SRR1946667 141156764 141156764 1 TRUE FALSE 140870107 13438687627 NA NA 2015-03-30T14:47:50.173 2015-03-31T00:44:28.240 2015-03-31T01:28:56.523 200 GSM1646709 SRR1946667.bw HCC_334T c("tumor status: Tumor", "age: 55", "gender: M", "tissue: liver") SRP056696 SRS888596 SRX973356 SRR1946670 114275332 114275332 1 TRUE FALSE 113906535 10616076913 NA NA 2015-03-30T14:47:24.633 2015-03-31T00:44:27.883 2015-03-31T01:37:49.687 200 GSM1646712 SRR1946670.bw HCC_337T c("tumor status: Tumor", "age: 41", "gender: M", "tissue: liver") SRP056696 SRS888598 SRX973349 SRR1946663 130130396 130130396 1 TRUE FALSE 129823968 12310577038 NA NA 2015-03-30T14:46:25.710 2015-03-31T00:44:26.910 2015-03-31T01:24:33.480 200 GSM1646705 SRR1946663.bw HCC_329T c("tumor status: Tumor", "age: 53", "gender: M", "tissue: liver") SRP056696 SRS888599 SRX973350 SRR1946664 115186736 115186736 1 TRUE FALSE 115069570 11123178165 NA NA 2015-03-30T14:46:23.233 2015-03-31T00:44:26.863 2015-03-31T01:34:29.190 200 GSM1646706 SRR1946664.bw HCC_330T c("tumor status: Tumor", "age: 31", "gender: M", "tissue: liver") SRP056696 SRS888600 SRX973348 SRR1946662 118436560 118436560 1 TRUE FALSE 118207710 11546038131 NA NA 2015-03-30T14:48:09.270 2015-03-31T00:44:28.453 2015-03-31T01:28:51.750 200 GSM1646704 SRR1946662.bw HCC_328T c("tumor status: Tumor", "age: 43", "gender: M", "tissue: liver") SRP056696 SRS888601 SRX973347 SRR1946661 123831820 123831820 1 TRUE FALSE 123661842 11994752389 NA NA 2015-03-30T14:47:02.620 2015-03-31T00:44:27.563 2015-03-31T01:37:47.723 200 GSM1646703 SRR1946661.bw HCC_327T c("tumor status: Tumor", "age: 43", "gender: M", "tissue: liver") SRP056696 SRS888602 SRX973346 SRR1946660 128607300 128607300 1 TRUE FALSE 128469881 12349967451 NA NA 2015-03-30T14:47:12.930 2015-03-31T00:44:27.717 2015-03-31T01:34:22.330 200 GSM1646702 SRR1946660.bw HCC_326T c("tumor status: Tumor", "age: 51", "gender: M", "tissue: liver") SRP056696 SRS888603 SRX973345 SRR1946659 122555560 122555560 1 TRUE FALSE 122360710 11903216647 NA NA 2015-03-30T14:46:55.500 2015-03-31T00:44:27.457 2015-03-31T01:28:49.640 200 GSM1646701 SRR1946659.bw HCC_325T c("tumor status: Tumor", "age: 55", "gender: F", "tissue: liver") SRP056696 SRS888604 SRX973344 SRR1946658 126136174 126136174 1 TRUE FALSE 126032150 12233816256 NA NA 2015-03-30T14:47:30.690 2015-03-31T00:44:27.960 2015-03-31T01:28:46.537 200 GSM1646700 SRR1946658.bw HCC_323T c("tumor status: Tumor", "age: 56", "gender: M", "tissue: liver") SRP056696 SRS888605 SRX973343 SRR1946657 152661302 152661302 1 TRUE FALSE 152266205 14842192886 NA NA 2015-03-30T14:47:55.500 2015-03-31T00:44:28.310 2015-03-31T01:34:19.040 200 GSM1646699 SRR1946657.bw HCC_322T c("tumor status: Tumor", "age: 39", "gender: M", "tissue: liver") SRP056696 SRS888606 SRX973341 SRR1946655 143188102 143188102 1 TRUE FALSE 142964360 13706051002 NA NA 2015-03-30T14:47:47.677 2015-03-31T00:44:28.203 2015-03-31T01:34:18.250 200 GSM1646697 SRR1946655.bw HCC_320T c("tumor status: Tumor", "age: 46", "gender: M", "tissue: liver") SRP056696 SRS888607 SRX973340 SRR1946654 136537640 136537640 1 TRUE FALSE 136346399 13266005793 NA NA 2015-03-30T14:46:38.910 2015-03-31T00:44:27.117 2015-03-31T01:28:43.280 200 GSM1646696 SRR1946654.bw HCC_319T c("tumor status: Tumor", "age: 51", "gender: F", "tissue: liver") SRP056696 SRS888608 SRX973339 SRR1946653 119802904 119802904 1 TRUE FALSE 119426939 11486264019 NA NA 2015-03-30T14:46:16.840 2015-03-31T00:44:26.720 2015-03-31T01:37:44.830 200 GSM1646695 SRR1946653.bw HCC_317T c("tumor status: Tumor", "age: 43", "gender: M", "tissue: liver") SRP056696 SRS888609 SRX973338 SRR1946652 116326652 116326652 1 TRUE FALSE 116199323 11161463384 NA NA 2015-03-30T14:46:30.200 2015-03-31T00:44:26.977 2015-03-31T01:37:42.823 200 GSM1646694 SRR1946652.bw HCC_316T c("tumor status: Tumor", "age: 44", "gender: M", "tissue: liver") SRP056696 SRS888610 SRX973337 SRR1946651 154122014 154122014 1 TRUE FALSE 154000850 14930076865 NA NA 2015-03-30T14:47:27.483 2015-03-31T00:44:27.920 2015-03-31T01:42:17.160 200 GSM1646693 SRR1946651.bw HCC_315T c("tumor status: Tumor", "age: 52", "gender: M", "tissue: liver") SRP056696 SRS888611 SRX973336 SRR1946650 127055646 127055646 1 TRUE FALSE 126757925 12504252428 NA NA 2015-03-30T14:46:19.110 2015-03-31T00:44:26.767 2015-03-31T01:28:40.150 200 GSM1646692 SRR1946650.bw HCC_314T c("tumor status: Tumor", "age: 31", "gender: M", "tissue: liver") SRP056696 SRS888612 SRX973335 SRR1946649 178356808 178356808 1 TRUE FALSE 178109183 17466876906 NA NA 2015-03-30T14:46:36.757 2015-03-31T00:44:27.077 2015-03-31T01:28:37.157 200 GSM1646691 SRR1946649.bw HCC_312T c("tumor status: Tumor", "age: 32", "gender: F", "tissue: liver") SRP056696 SRS888613 SRX973334 SRR1946648 143298326 143298326 1 TRUE FALSE 143179220 14046188349 NA NA 2015-03-30T14:48:18.780 2015-03-31T00:44:28.570 2015-03-31T01:28:33.047 200 GSM1646690 SRR1946648.bw HCC_311T c("tumor status: Tumor", "age: 56", "gender: M", "tissue: liver") SRP056696 SRS888614 SRX973333 SRR1946647 98462360 98462360 1 TRUE FALSE 98308358 9450515983 NA NA 2015-03-30T14:47:10.203 2015-03-31T00:44:27.683 2015-03-31T01:37:40.080 200 GSM1646689 SRR1946647.bw HCC_310T c("tumor status: Tumor", "age: 74", "gender: M", "tissue: liver") SRP056696 SRS888615 SRX973332 SRR1946646 172521834 172521834 1 TRUE FALSE 172030004 16829862974 NA NA 2015-03-30T14:47:58.867 2015-03-31T00:44:28.347 2015-03-31T01:36:18.467 200 GSM1646688 SRR1946646.bw HCC_309T c("tumor status: Tumor", "age: 40", "gender: M", "tissue: liver") SRP056696 SRS888616 SRX973331 SRR1946645 142291168 142291168 1 TRUE FALSE 142211404 13971121281 NA NA 2015-03-30T14:48:05.030 2015-03-31T00:44:28.413 2015-03-31T01:42:16.267 200 GSM1646687 SRR1946645.bw HCC_308T c("tumor status: Tumor", "age: 71", "gender: M", "tissue: liver") SRP056696 SRS888617 SRX973330 SRR1946644 138207942 138207942 1 TRUE FALSE 138086839 13612372361 NA NA 2015-03-30T14:46:34.740 2015-03-31T00:44:27.047 2015-03-31T01:37:28.507 200 GSM1646686 SRR1946644.bw HCC_307T c("tumor status: Tumor", "age: 57", "gender: F", "tissue: liver") SRP056696 SRS888618 SRX973329 SRR1946643 140908874 140908874 1 TRUE FALSE 140762654 13898941259 NA NA 2015-03-30T14:45:36.580 2015-03-31T00:44:26.583 2015-03-31T01:24:28.357 200 GSM1646685 SRR1946643.bw HCC_305T c("tumor status: Tumor", "age: 33", "gender: M", "tissue: liver") SRP056696 SRS888619 SRX973328 SRR1946642 154203168 154203168 1 TRUE FALSE 154089970 15204602053 NA NA 2015-03-30T14:45:34.120 2015-03-31T00:44:26.547 2015-03-31T01:34:17.400 200 GSM1646684 SRR1946642.bw HCC_304T c("tumor status: Tumor", "age: 79", "gender: M", "tissue: liver") SRP056696 SRS888620 SRX973327 SRR1946641 238862882 238862882 1 TRUE FALSE 238280831 22971387811 NA NA 2015-03-30T14:45:40.883 2015-03-31T00:44:26.653 2015-03-31T01:28:29.227 200 GSM1646683 SRR1946641.bw HCC_353N c("tumor status: Adjacent Normal tissue", "tissue: liver") SRP056696 SRS888621 SRX973342 SRR1946656 143588700 143588700 1 TRUE FALSE 143420763 13858600969 NA NA 2015-03-30T14:48:01.320 2015-03-31T00:44:28.380 2015-03-31T01:37:24.207 200 GSM1646698 SRR1946656.bw HCC_321T c("tumor status: Tumor", "age: 41", "gender: M", "tissue: liver") SRP056696 SRS888622 SRX973326 SRR1946640 127410204 127410204 1 TRUE FALSE 127255915 12531916273 NA NA 2015-03-30T14:45:38.750 2015-03-31T00:44:26.620 2015-03-31T01:24:24.880 200 GSM1646682 SRR1946640.bw HCC_356N c("tumor status: Adjacent Normal tissue", "tissue: liver") SRP056696 SRS888623 SRX973325 SRR1946639 244596524 244596524 1 TRUE FALSE 244302911 24020092310 NA NA 2015-03-30T14:45:29.807 2015-03-31T00:44:26.447 2015-03-31T01:42:15.470 200 GSM1646681 SRR1946639.bw HCC_355N c("tumor status: Adjacent Normal tissue", "tissue: liver") SRP056696 SRS888624 SRX973324 SRR1946638 162226016 162226016 1 TRUE FALSE 161805852 15705885381 NA NA 2015-03-30T14:45:32.030 2015-03-31T00:44:26.513 2015-03-31T01:34:16.193 200 GSM1646680 SRR1946638.bw HCC_302N c("tumor status: Adjacent Normal tissue", "tissue: liver") SRP056696 SRS888625 SRX973323 SRR1946637 196437198 196437198 1 TRUE FALSE 196141914 19030257088 NA NA 2015-03-30T14:45:43.080 2015-03-31T00:44:26.690 2015-03-31T01:28:24.400 200 GSM1646679 SRR1946637.bw HCC_301N c("tumor status: Adjacent Normal tissue", "tissue: liver") SRP056696 SRS888588 SRX973360 SRR1946674 122171478 0 0 TRUE FALSE 0 NA NA NA 2015-03-30T14:46:48.230 2015-03-31T00:44:27.283 2015-03-31T01:42:18.660 200 GSM1646716 NA HCC_346T c("tumor status: Tumor", "age: 54", "gender: M", "tissue: liver") SRP056696 SRS888597 SRX973351 SRR1946665 128013194 0 0 TRUE FALSE 0 NA NA NA 2015-03-30T14:48:16.390 2015-03-31T00:44:28.540 2015-03-31T01:28:53.770 200 GSM1646707 NA HCC_332T c("tumor status: Tumor", "age: 56", "gender: M", "tissue: liver")