project	sample	experiment	run	read_count_as_reported_by_sra	reads_downloaded	proportion_of_reads_reported_by_sra_downloaded	paired_end	sra_misreported_paired_end	mapped_read_count	auc	sharq_beta_tissue	sharq_beta_cell_type	biosample_submission_date	biosample_publication_date	biosample_update_date	avg_read_length	geo_accession	bigwig_file	title	characteristics
SRP057244	SRS1195979	SRX1469686	SRR2980106	4463340	4463340	1	FALSE	FALSE	4401988	323120728	NA	NA	2015-12-07T16:46:44.000	2015-12-12T01:17:38.183	2015-12-12T01:20:52.310	75	GSM1967337	SRR2980106.bw	THP-1 with PMA WT 24 h replicate 2	c("cell line: THP-1 (-PMA)", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line THP-1 (-PMA)and Salmonella Typhimurium SL1344")
SRP057244	SRS1195980	SRX1469685	SRR2980105	7353728	7353728	1	FALSE	FALSE	7184316	582053503	NA	NA	2015-12-07T16:46:43.000	2015-12-12T01:17:36.993	2015-12-12T01:20:52.110	96	GSM1967336	SRR2980105.bw	THP-1 with PMA WT 24 h replicate 1	c("cell line: THP-1 (-PMA)", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line THP-1 (-PMA)and Salmonella Typhimurium SL1344")
SRP057244	SRS1195981	SRX1469684	SRR2980104	4593773	4593773	1	FALSE	FALSE	4498148	331024601	NA	NA	2015-12-07T16:46:42.000	2015-12-12T01:17:36.030	2015-12-12T01:20:51.910	75	GSM1967335	SRR2980104.bw	THP-1 with PMA WT 04 h replicate 2	c("cell line: THP-1 (-PMA)", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line THP-1 (-PMA)and Salmonella Typhimurium SL1344")
SRP057244	SRS1195982	SRX1469683	SRR2980103	23933418	23933418	1	FALSE	FALSE	23687758	1715299855	NA	NA	2015-12-07T16:46:41.000	2015-12-12T01:17:35.110	2015-12-12T01:20:51.667	96	GSM1967334	SRR2980103.bw	THP-1 with PMA WT 04 h replicate 1	c("cell line: THP-1 (-PMA)", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line THP-1 (-PMA)and Salmonella Typhimurium SL1344")
SRP057244	SRS1195983	SRX1469682	SRR2980102	4543025	4543025	1	FALSE	FALSE	4057674	295012517	NA	NA	2015-12-07T16:46:41.000	2015-12-12T01:17:34.357	2015-12-12T01:20:51.460	75	GSM1967333	SRR2980102.bw	THP-1 with PMA WT 00 h replicate 2	c("cell line: THP-1 (-PMA)", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line THP-1 (-PMA)and Salmonella Typhimurium SL1344")
SRP057244	SRS1195984	SRX1469681	SRR2980101	7064584	7064584	1	FALSE	FALSE	1672664	61384233	NA	NA	2015-12-07T16:46:40.000	2015-12-12T01:17:24.030	2015-12-12T01:20:51.243	91	GSM1967332	SRR2980101.bw	THP-1 with PMA WT 00 h replicate 1	c("cell line: THP-1 (-PMA)", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line THP-1 (-PMA)and Salmonella Typhimurium SL1344")
SRP057244	SRS1195985	SRX1469680	SRR2980100	5318781	5318781	1	FALSE	FALSE	5189675	377592911	NA	NA	2015-12-07T16:46:38.000	2015-12-12T01:17:23.290	2015-12-12T01:20:51.013	75	GSM1967331	SRR2980100.bw	THP-1 without PMA WT 24 h replicate 2	c("cell line: THP-1 (-PMA)", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line THP-1 (-PMA)and Salmonella Typhimurium SL1344")
SRP057244	SRS1195986	SRX1469679	SRR2980099	2413463	2413463	1	FALSE	FALSE	2340217	204703311	NA	NA	2015-12-07T16:46:37.000	2015-12-12T01:17:22.237	2015-12-12T01:20:50.730	101	GSM1967330	SRR2980099.bw	THP-1 without PMA WT 24 h replicate 1	c("cell line: THP-1 (-PMA)", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line THP-1 (-PMA)and Salmonella Typhimurium SL1344")
SRP057244	SRS1195987	SRX1469678	SRR2980098	5065909	5065909	1	FALSE	FALSE	5027963	369379020	NA	NA	2015-12-07T16:46:36.000	2015-12-12T01:17:21.513	2015-12-12T01:20:50.433	75	GSM1967329	SRR2980098.bw	THP-1 without PMA WT 04 h replicate 2	c("cell line: THP-1 (-PMA)", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line THP-1 (-PMA)and Salmonella Typhimurium SL1344")
SRP057244	SRS1195988	SRX1469677	SRR2980097	2340690	2340690	1	FALSE	FALSE	2299044	209472161	NA	NA	2015-12-07T16:46:36.000	2015-12-12T01:17:20.473	2015-12-12T01:20:50.187	101	GSM1967328	SRR2980097.bw	THP-1 without PMA WT 04 h replicate 1	c("cell line: THP-1 (-PMA)", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line THP-1 (-PMA)and Salmonella Typhimurium SL1344")
SRP057244	SRS1195989	SRX1469676	SRR2980096	4682167	4682167	1	FALSE	FALSE	4601693	338833089	NA	NA	2015-12-07T16:46:35.000	2015-12-12T01:17:19.717	2015-12-12T01:20:49.963	75	GSM1967327	SRR2980096.bw	THP-1 without PMA WT 00 h replicate 2	c("cell line: THP-1 (-PMA)", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line THP-1 (-PMA)and Salmonella Typhimurium SL1344")
SRP057244	SRS1196003	SRX1469662	SRR2980082	6979092	6979092	1	FALSE	FALSE	6716608	433869516	NA	NA	2015-12-07T16:47:12.000	2015-12-12T01:18:01.387	2015-12-12T01:20:49.007	75	GSM1967313	SRR2980082.bw	LoVo WT 20 h replicate 2	c("cell line: LoVo", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line LoVo and Salmonella Typhimurium SL1344")
SRP057244	SRS1196004	SRX1469661	SRR2980081	8453607	8453607	1	FALSE	FALSE	7848756	517689190	NA	NA	2015-12-07T16:47:11.000	2015-12-12T01:18:00.417	2015-12-12T01:20:48.777	75	GSM1967312	SRR2980081.bw	LoVo WT 20 h replicate 1	c("cell line: LoVo", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line LoVo and Salmonella Typhimurium SL1344")
SRP057244	SRS1196005	SRX1469660	SRR2980080	4982229	4982229	1	FALSE	FALSE	4594749	253246023	NA	NA	2015-12-07T16:47:10.000	2015-12-12T01:17:59.447	2015-12-12T01:20:48.560	75	GSM1967311	SRR2980080.bw	LoVo WT 02 h replicate 2	c("cell line: LoVo", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line LoVo and Salmonella Typhimurium SL1344")
SRP057244	SRS1196006	SRX1469659	SRR2980079	9234618	9234618	1	FALSE	FALSE	8547149	561319243	NA	NA	2015-12-07T16:47:09.000	2015-12-12T01:17:58.397	2015-12-12T01:20:48.350	75	GSM1967310	SRR2980079.bw	LoVo WT 02 h replicate 1	c("cell line: LoVo", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line LoVo and Salmonella Typhimurium SL1344")
SRP057244	SRS1196007	SRX1469658	SRR2980078	4144817	4144817	1	FALSE	FALSE	4055547	255820302	NA	NA	2015-12-07T16:47:08.000	2015-12-12T01:17:57.633	2015-12-12T01:20:48.103	75	GSM1967309	SRR2980078.bw	LoVo WT 00 h replicate 2	c("cell line: LoVo", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line LoVo and Salmonella Typhimurium SL1344")
SRP057244	SRS1196008	SRX1469657	SRR2980077	9035558	9035558	1	FALSE	FALSE	8234482	543705737	NA	NA	2015-12-07T16:46:23.000	2015-12-12T01:17:56.853	2015-12-12T01:20:47.870	75	GSM1967308	SRR2980077.bw	LoVo WT 00 h replicate 1	c("cell line: LoVo", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line LoVo and Salmonella Typhimurium SL1344")
SRP057244	SRS1196021	SRX1469644	SRR2980064	4436803	4436803	1	FALSE	FALSE	4327633	272314730	NA	NA	2015-12-07T16:47:01.000	2015-12-12T01:17:30.637	2015-12-12T01:20:44.857	75	GSM1967295	SRR2980064.bw	HT29 WT 20 h replicate 2	c("cell line: HT29", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line HT29 and Salmonella Typhimurium SL1344")
SRP057244	SRS1196022	SRX1469643	SRR2980063	7660132	7660132	1	FALSE	FALSE	7106734	468619382	NA	NA	2015-12-07T16:47:00.000	2015-12-12T01:17:29.863	2015-12-12T01:20:44.583	75	GSM1967294	SRR2980063.bw	HT29 WT 20 h replicate 1	c("cell line: HT29", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line HT29 and Salmonella Typhimurium SL1344")
SRP057244	SRS1196023	SRX1469642	SRR2980062	3958958	3958958	1	FALSE	FALSE	3888840	275621005	NA	NA	2015-12-07T16:46:59.000	2015-12-12T01:17:10.327	2015-12-12T01:20:44.387	75	GSM1967293	SRR2980062.bw	HT29 WT 02 h replicate 2	c("cell line: HT29", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line HT29 and Salmonella Typhimurium SL1344")
SRP057244	SRS1196024	SRX1469641	SRR2980061	8061078	8061078	1	FALSE	FALSE	7488290	496975772	NA	NA	2015-12-07T16:46:58.000	2015-12-12T01:17:09.527	2015-12-12T01:20:44.173	75	GSM1967292	SRR2980061.bw	HT29 WT 02 h replicate 1	c("cell line: HT29", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line HT29 and Salmonella Typhimurium SL1344")
SRP057244	SRS1196025	SRX1469640	SRR2980060	11471651	11471651	1	FALSE	FALSE	10842981	701448558	NA	NA	2015-12-07T16:46:57.000	2015-12-12T01:17:08.750	2015-12-12T01:20:43.880	75	GSM1967291	SRR2980060.bw	HT29 WT 00 h replicate 2	c("cell line: HT29", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line HT29 and Salmonella Typhimurium SL1344")
SRP057244	SRS1196026	SRX1469639	SRR2980059	8186113	8186113	1	FALSE	FALSE	7609991	503988083	NA	NA	2015-12-07T16:46:56.000	2015-12-12T01:17:07.673	2015-12-12T01:20:43.670	75	GSM1967290	SRR2980059.bw	HT29 WT 00 h replicate 1	c("cell line: HT29", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line HT29 and Salmonella Typhimurium SL1344")
SRP057244	SRS1196027	SRX1469638	SRR2980058	5048612	5048612	1	FALSE	FALSE	4931051	363160928	NA	NA	2015-12-07T16:46:56.000	2015-12-12T01:17:06.697	2015-12-12T01:20:43.480	75	GSM1967289	SRR2980058.bw	HEK WT 24 h replicate 2	c("cell line: HEK 293", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line HEK 293 and Salmonella Typhimurium SL1344")
SRP057244	SRS1196028	SRX1469637	SRR2980057	2830482	2830482	1	FALSE	FALSE	2678992	216084828	NA	NA	2015-12-07T16:46:55.000	2015-12-12T01:17:05.870	2015-12-12T01:20:43.257	101	GSM1967288	SRR2980057.bw	HEK WT 24 h replicate 1	c("cell line: HEK 293", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line HEK 293 and Salmonella Typhimurium SL1344")
SRP057244	SRS1196029	SRX1469636	SRR2980056	4573076	4573076	1	FALSE	FALSE	4560027	336816244	NA	NA	2015-12-07T16:46:54.000	2015-12-12T01:17:04.683	2015-12-12T01:20:42.977	75	GSM1967287	SRR2980056.bw	HEK WT 04 h replicate 2	c("cell line: HEK 293", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line HEK 293 and Salmonella Typhimurium SL1344")
SRP057244	SRS1196030	SRX1469635	SRR2980055	2918836	2918836	1	FALSE	FALSE	2866038	244180756	NA	NA	2015-12-07T16:46:53.000	2015-12-12T01:17:03.517	2015-12-12T01:20:42.777	101	GSM1967286	SRR2980055.bw	HEK WT 04 h replicate 1	c("cell line: HEK 293", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line HEK 293 and Salmonella Typhimurium SL1344")
SRP057244	SRS1196031	SRX1469634	SRR2980054	5005358	5005358	1	FALSE	FALSE	4988081	367047476	NA	NA	2015-12-07T16:46:52.000	2015-12-12T01:17:02.500	2015-12-12T01:20:42.573	75	GSM1967285	SRR2980054.bw	HEK WT 00 h replicate 2	c("cell line: HEK 293", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line HEK 293 and Salmonella Typhimurium SL1344")
SRP057244	SRS1196032	SRX1469633	SRR2980053	1210933	1210933	1	FALSE	FALSE	1156584	102093783	NA	NA	2015-12-07T16:46:51.000	2015-12-12T01:17:01.250	2015-12-12T01:20:42.370	101	GSM1967284	SRR2980053.bw	HEK WT 00 h replicate 1	c("cell line: HEK 293", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line HEK 293 and Salmonella Typhimurium SL1344")
SRP057244	SRS1196033	SRX1469632	SRR2980052	3742539	3742539	1	FALSE	FALSE	3036872	200837442	NA	NA	2015-12-07T16:46:50.000	2015-12-12T01:17:00.303	2015-12-12T01:20:42.157	75	GSM1967283	SRR2980052.bw	CaCo-2 WT 24 h replicate 2	c("cell line: CaCo-2", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line CaCo-2 and Salmonella Typhimurium SL1344")
SRP057244	SRS1196034	SRX1469631	SRR2980051	2980396	2980396	1	FALSE	FALSE	2270775	150090549	NA	NA	2015-12-07T16:46:49.000	2015-12-12T01:16:59.437	2015-12-12T01:20:41.937	75	GSM1967282	SRR2980051.bw	CaCo-2 WT 24 h replicate 1	c("cell line: CaCo-2", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line CaCo-2 and Salmonella Typhimurium SL1344")
SRP057244	SRS1196035	SRX1469630	SRR2980050	4320994	4320994	1	FALSE	FALSE	3745532	259152890	NA	NA	2015-12-07T16:46:48.000	2015-12-12T01:16:58.347	2015-12-12T01:20:41.697	75	GSM1967281	SRR2980050.bw	CaCo-2 WT 04 h replicate 2	c("cell line: CaCo-2", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line CaCo-2 and Salmonella Typhimurium SL1344")
SRP057244	SRS1196036	SRX1469628	SRR2980048	2869915	2869915	1	FALSE	FALSE	2104170	140157429	NA	NA	2015-12-07T16:46:46.000	2015-12-12T01:16:56.640	2015-12-12T01:20:41.473	75	GSM1967279	SRR2980048.bw	CaCo-2 WT 00 h replicate 2	c("cell line: CaCo-2", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line CaCo-2 and Salmonella Typhimurium SL1344")
SRP057244	SRS1196037	SRX1469629	SRR2980049	4989171	4989171	1	FALSE	FALSE	3856287	256754285	NA	NA	2015-12-07T16:46:47.000	2015-12-12T01:16:57.440	2015-12-12T01:20:41.220	75	GSM1967280	SRR2980049.bw	CaCo-2 WT 04 h replicate 1	c("cell line: CaCo-2", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line CaCo-2 and Salmonella Typhimurium SL1344")
SRP057244	SRS1196040	SRX1469627	SRR2980047	2324499	2324499	1	FALSE	FALSE	1731320	116795763	NA	NA	2015-12-07T16:46:45.000	2015-12-12T01:16:55.817	2015-12-12T01:20:40.537	75	GSM1967278	SRR2980047.bw	CaCo-2 WT 00 h replicate 1	c("cell line: CaCo-2", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line CaCo-2 and Salmonella Typhimurium SL1344")
SRP057244	SRS1196046	SRX1469617	SRR2980037	1844068	1844068	1	FALSE	FALSE	1740209	156184259	NA	NA	2015-12-07T16:46:10.000	2015-12-12T01:16:46.070	2015-12-12T01:20:39.100	101	GSM1967268	SRR2980037.bw	AGS WT 24 h replicate 1	c("cell line: AGS", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line AGS and Salmonella Typhimurium SL1344")
SRP057244	SRS1196047	SRX1469615	SRR2980035	1156952	1156952	1	FALSE	FALSE	1121996	102248996	NA	NA	2015-12-07T16:46:08.000	2015-12-12T01:16:44.157	2015-12-12T01:20:38.870	101	GSM1967266	SRR2980035.bw	AGS WT 04 h replicate 1	c("cell line: AGS", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line AGS and Salmonella Typhimurium SL1344")
SRP057244	SRS1196048	SRX1469616	SRR2980036	5160795	5160795	1	FALSE	FALSE	5127477	377062159	NA	NA	2015-12-07T16:46:08.000	2015-12-12T01:16:44.977	2015-12-12T01:20:38.670	75	GSM1967267	SRR2980036.bw	AGS WT 04 h replicate 2	c("cell line: AGS", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line AGS and Salmonella Typhimurium SL1344")
SRP057244	SRS1196050	SRX1469618	SRR2980038	4773666	4773666	1	FALSE	FALSE	4748304	352009620	NA	NA	2015-12-07T16:46:11.000	2015-12-12T01:16:47.197	2015-12-12T01:20:38.163	75	GSM1967269	SRR2980038.bw	AGS WT 24 h replicate 2	c("cell line: AGS", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line AGS and Salmonella Typhimurium SL1344")
SRP057244	SRS1196051	SRX1469614	SRR2980034	4963021	4963021	1	FALSE	FALSE	4907960	362241374	NA	NA	2015-12-07T16:46:07.000	2015-12-12T01:16:43.167	2015-12-12T01:20:37.910	75	GSM1967265	SRR2980034.bw	AGS WT 00 h replicate 2	c("cell line: AGS", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line AGS and Salmonella Typhimurium SL1344")
SRP057244	SRS1196067	SRX1469613	SRR2980033	1343250	1343250	1	FALSE	FALSE	1319589	120761340	NA	NA	2015-12-07T16:46:06.000	2015-12-12T01:16:41.910	2015-12-12T01:20:34.090	101	GSM1967264	SRR2980033.bw	AGS WT 00 h replicate 1	c("cell line: AGS", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line AGS and Salmonella Typhimurium SL1344")
SRP057244	SRS1195990	SRX1469675	SRR2980095	2254195	0	0	FALSE	FALSE	0	NA	NA	NA	2015-12-07T16:46:34.000	2015-12-12T01:17:18.730	2015-12-12T01:20:49.757	101	GSM1967326	NA	THP-1 without PMA WT 00 h replicate 1	c("cell line: THP-1 (-PMA)", "strain: Salmonella Typhimurium SL1344", "organism: mixed sample: human cell line THP-1 (-PMA)and Salmonella Typhimurium SL1344")