project sample experiment run read_count_as_reported_by_sra reads_downloaded proportion_of_reads_reported_by_sra_downloaded paired_end sra_misreported_paired_end mapped_read_count auc sharq_beta_tissue sharq_beta_cell_type biosample_submission_date biosample_publication_date biosample_update_date avg_read_length geo_accession bigwig_file title characteristics SRP063860 SRS1069948 SRX1247206 SRR2413338 21693768 21693768 1 TRUE FALSE 21288783 2973012756 NA NA 2015-09-15T13:16:40.000 2015-09-16T01:22:53.907 2015-09-16T01:27:33.753 283 GSM1881573 SRR2413338.bw Doxycycline-treated sample 4 [D3-2_S6_L004] c("cell_type: HCET", "shRNA: doxycycline-inducible shRNA against PNN", "treatment: Doxycycline treated") SRP063860 SRS1069949 SRX1247205 SRR2413337 22748970 22748970 1 TRUE FALSE 22333868 3119522255 NA NA 2015-09-15T13:16:39.000 2015-09-16T01:22:52.977 2015-09-16T01:27:33.307 283 GSM1881572 SRR2413337.bw Doxycycline-treated sample 4 [D3-2_S6_L003] c("cell_type: HCET", "shRNA: doxycycline-inducible shRNA against PNN", "treatment: Doxycycline treated") SRP063860 SRS1069950 SRX1247204 SRR2413336 21613606 21613606 1 TRUE FALSE 21163646 2956393339 NA NA 2015-09-15T13:15:26.000 2015-09-16T01:22:51.457 2015-09-16T01:27:32.890 283 GSM1881571 SRR2413336.bw Doxycycline-treated sample 4 [D3-2_S6_L002] c("cell_type: HCET", "shRNA: doxycycline-inducible shRNA against PNN", "treatment: Doxycycline treated") SRP063860 SRS1069951 SRX1247203 SRR2413335 22165882 22165882 1 TRUE FALSE 21719819 3033933858 NA NA 2015-09-15T13:15:25.000 2015-09-16T01:22:49.967 2015-09-16T01:27:32.527 284 GSM1881570 SRR2413335.bw Doxycycline-treated sample 4 [D3-2_S6_L001] c("cell_type: HCET", "shRNA: doxycycline-inducible shRNA against PNN", "treatment: Doxycycline treated") SRP063860 SRS1069952 SRX1247202 SRR2413334 19940742 19940742 1 TRUE FALSE 19582844 2582798622 NA NA 2015-09-15T13:16:43.000 2015-09-16T01:22:48.693 2015-09-16T01:27:32.310 269 GSM1881569 SRR2413334.bw Doxycycline-treated sample 3 [D2-2_S5_L004] c("cell_type: HCET", "shRNA: doxycycline-inducible shRNA against PNN", "treatment: Doxycycline treated") SRP063860 SRS1069953 SRX1247201 SRR2413333 20866626 20866626 1 TRUE FALSE 20503942 2704961108 NA NA 2015-09-15T13:16:41.000 2015-09-16T01:22:47.547 2015-09-16T01:27:31.840 269 GSM1881568 SRR2413333.bw Doxycycline-treated sample 3 [D2-2_S5_L003] c("cell_type: HCET", "shRNA: doxycycline-inducible shRNA against PNN", "treatment: Doxycycline treated") SRP063860 SRS1069954 SRX1247200 SRR2413332 19806510 19806510 1 TRUE FALSE 19416533 2562777370 NA NA 2015-09-15T13:16:38.000 2015-09-16T01:22:46.537 2015-09-16T01:27:31.357 269 GSM1881567 SRR2413332.bw Doxycycline-treated sample 3 [D2-2_S5_L002] c("cell_type: HCET", "shRNA: doxycycline-inducible shRNA against PNN", "treatment: Doxycycline treated") SRP063860 SRS1069955 SRX1247199 SRR2413331 20299246 20299246 1 TRUE FALSE 19915592 2627793174 NA NA 2015-09-15T13:16:37.000 2015-09-16T01:22:45.290 2015-09-16T01:27:31.087 269 GSM1881566 SRR2413331.bw Doxycycline-treated sample 3 [D2-2_S5_L001] c("cell_type: HCET", "shRNA: doxycycline-inducible shRNA against PNN", "treatment: Doxycycline treated") SRP063860 SRS1069956 SRX1247198 SRR2413330 16769752 16769752 1 TRUE FALSE 16463909 2181529922 NA NA 2015-09-15T13:16:35.000 2015-09-16T01:22:44.167 2015-09-16T01:27:30.650 270 GSM1881565 SRR2413330.bw Doxycycline-treated sample 2 [D1-3_S8_L004] c("cell_type: HCET", "shRNA: doxycycline-inducible shRNA against PNN", "treatment: Doxycycline treated") SRP063860 SRS1069957 SRX1247197 SRR2413329 17587300 17587300 1 TRUE FALSE 17271226 2289321682 NA NA 2015-09-15T13:16:34.000 2015-09-16T01:22:42.907 2015-09-16T01:27:30.350 270 GSM1881564 SRR2413329.bw Doxycycline-treated sample 2 [D1-3_S8_L003] c("cell_type: HCET", "shRNA: doxycycline-inducible shRNA against PNN", "treatment: Doxycycline treated") SRP063860 SRS1069958 SRX1247196 SRR2413328 16642362 16642362 1 TRUE FALSE 16312431 2162839429 NA NA 2015-09-15T13:16:33.000 2015-09-16T01:22:41.947 2015-09-16T01:27:29.813 270 GSM1881563 SRR2413328.bw Doxycycline-treated sample 2 [D1-3_S8_L002] c("cell_type: HCET", "shRNA: doxycycline-inducible shRNA against PNN", "treatment: Doxycycline treated") SRP063860 SRS1069959 SRX1247195 SRR2413327 17113092 17113092 1 TRUE FALSE 16786739 2225019037 NA NA 2015-09-15T13:16:31.000 2015-09-16T01:22:40.680 2015-09-16T01:27:29.430 270 GSM1881562 SRR2413327.bw Doxycycline-treated sample 2 [D1-3_S8_L001] c("cell_type: HCET", "shRNA: doxycycline-inducible shRNA against PNN", "treatment: Doxycycline treated") SRP063860 SRS1069960 SRX1247194 SRR2413326 19745122 19745122 1 TRUE FALSE 19395705 2654361823 NA NA 2015-09-15T13:16:30.000 2015-09-16T01:22:39.647 2015-09-16T01:27:28.680 278 GSM1881561 SRR2413326.bw Doxycycline-treated sample 1 [D1-2_S4_L004] c("cell_type: HCET", "shRNA: doxycycline-inducible shRNA against PNN", "treatment: Doxycycline treated") SRP063860 SRS1069961 SRX1247193 SRR2413325 20690840 20690840 1 TRUE FALSE 20337989 2783853920 NA NA 2015-09-15T13:16:29.000 2015-09-16T01:22:38.003 2015-09-16T01:27:28.230 278 GSM1881560 SRR2413325.bw Doxycycline-treated sample 1 [D1-2_S4_L003] c("cell_type: HCET", "shRNA: doxycycline-inducible shRNA against PNN", "treatment: Doxycycline treated") SRP063860 SRS1069962 SRX1247192 SRR2413324 19647972 19647972 1 TRUE FALSE 19261640 2637342357 NA NA 2015-09-15T13:16:27.000 2015-09-16T01:23:46.270 2015-09-16T01:27:27.617 278 GSM1881559 SRR2413324.bw Doxycycline-treated sample 1 [D1-2_S4_L002] c("cell_type: HCET", "shRNA: doxycycline-inducible shRNA against PNN", "treatment: Doxycycline treated") SRP063860 SRS1069963 SRX1247191 SRR2413323 20147634 20147634 1 TRUE FALSE 19773400 2706712323 NA NA 2015-09-15T13:16:26.000 2015-09-16T01:23:45.147 2015-09-16T01:27:27.250 278 GSM1881558 SRR2413323.bw Doxycycline-treated sample 1 [D1-2_S4_L001] c("cell_type: HCET", "shRNA: doxycycline-inducible shRNA against PNN", "treatment: Doxycycline treated") SRP063860 SRS1069964 SRX1247190 SRR2413322 19276606 19276606 1 TRUE FALSE 18911036 2624969793 NA NA 2015-09-15T13:16:25.000 2015-09-16T01:23:44.193 2015-09-16T01:27:26.930 282 GSM1881557 SRR2413322.bw Control sample 4 [C3-2_S3_L004] c("cell_type: HCET", "shRNA: doxycycline-inducible shRNA against PNN", "treatment: untreated") SRP063860 SRS1069965 SRX1247189 SRR2413321 20089704 20089704 1 TRUE FALSE 19718447 2736668012 NA NA 2015-09-15T13:16:24.000 2015-09-16T01:23:43.317 2015-09-16T01:27:25.910 282 GSM1881556 SRR2413321.bw Control sample 4 [C3-2_S3_L003] c("cell_type: HCET", "shRNA: doxycycline-inducible shRNA against PNN", "treatment: untreated") SRP063860 SRS1069966 SRX1247188 SRR2413320 19366192 19366192 1 TRUE FALSE 18953714 2631839913 NA NA 2015-09-15T13:16:22.000 2015-09-16T01:23:41.560 2015-09-16T01:27:25.580 282 GSM1881555 SRR2413320.bw Control sample 4 [C3-2_S3_L002] c("cell_type: HCET", "shRNA: doxycycline-inducible shRNA against PNN", "treatment: untreated") SRP063860 SRS1069967 SRX1247187 SRR2413319 19691020 19691020 1 TRUE FALSE 19295806 2679356958 NA NA 2015-09-15T13:16:21.000 2015-09-16T01:23:09.317 2015-09-16T01:27:25.217 282 GSM1881554 SRR2413319.bw Control sample 4 [C3-2_S3_L001] c("cell_type: HCET", "shRNA: doxycycline-inducible shRNA against PNN", "treatment: untreated") SRP063860 SRS1069968 SRX1247186 SRR2413318 18993390 18993390 1 TRUE FALSE 18647262 2349793583 NA NA 2015-09-15T13:16:20.000 2015-09-16T01:23:08.063 2015-09-16T01:27:24.833 257 GSM1881553 SRR2413318.bw Control sample 3 [C2-2_S2_L004] c("cell_type: HCET", "shRNA: doxycycline-inducible shRNA against PNN", "treatment: untreated") SRP063860 SRS1069969 SRX1247185 SRR2413317 19934304 19934304 1 TRUE FALSE 19580616 2466960334 NA NA 2015-09-15T13:15:41.000 2015-09-16T01:23:06.827 2015-09-16T01:27:24.330 257 GSM1881552 SRR2413317.bw Control sample 3 [C2-2_S2_L003] c("cell_type: HCET", "shRNA: doxycycline-inducible shRNA against PNN", "treatment: untreated") SRP063860 SRS1069970 SRX1247184 SRR2413316 18841058 18841058 1 TRUE FALSE 18464758 2327924150 NA NA 2015-09-15T13:15:40.000 2015-09-16T01:23:05.893 2015-09-16T01:27:23.933 257 GSM1881551 SRR2413316.bw Control sample 3 [C2-2_S2_L002] c("cell_type: HCET", "shRNA: doxycycline-inducible shRNA against PNN", "treatment: untreated") SRP063860 SRS1069971 SRX1247183 SRR2413315 19373318 19373318 1 TRUE FALSE 19003167 2394779114 NA NA 2015-09-15T13:15:39.000 2015-09-16T01:23:04.830 2015-09-16T01:27:23.607 258 GSM1881550 SRR2413315.bw Control sample 3 [C2-2_S2_L001] c("cell_type: HCET", "shRNA: doxycycline-inducible shRNA against PNN", "treatment: untreated") SRP063860 SRS1069972 SRX1247182 SRR2413314 21899828 21899828 1 TRUE FALSE 21529544 2912776464 NA NA 2015-09-15T13:15:38.000 2015-09-16T01:23:03.837 2015-09-16T01:27:23.303 275 GSM1881549 SRR2413314.bw Control sample 2 [C1-3_S7_L004] c("cell_type: HCET", "shRNA: doxycycline-inducible shRNA against PNN", "treatment: untreated") SRP063860 SRS1069973 SRX1247181 SRR2413313 23004982 23004982 1 TRUE FALSE 22621458 3060693555 NA NA 2015-09-15T13:15:37.000 2015-09-16T01:23:02.060 2015-09-16T01:27:22.837 275 GSM1881548 SRR2413313.bw Control sample 2 [C1-3_S7_L003] c("cell_type: HCET", "shRNA: doxycycline-inducible shRNA against PNN", "treatment: untreated") SRP063860 SRS1069974 SRX1247180 SRR2413312 21796362 21796362 1 TRUE FALSE 21385225 2892766803 NA NA 2015-09-15T13:15:36.000 2015-09-16T01:23:01.040 2015-09-16T01:27:22.490 275 GSM1881547 SRR2413312.bw Control sample 2 [C1-3_S7_L002] c("cell_type: HCET", "shRNA: doxycycline-inducible shRNA against PNN", "treatment: untreated") SRP063860 SRS1069975 SRX1247179 SRR2413311 22528440 22528440 1 TRUE FALSE 22004955 2976173487 NA NA 2015-09-15T13:15:34.000 2015-09-16T01:22:59.807 2015-09-16T01:27:22.240 275 GSM1881546 SRR2413311.bw Control sample 2 [C1-3_S7_L001] c("cell_type: HCET", "shRNA: doxycycline-inducible shRNA against PNN", "treatment: untreated") SRP063860 SRS1069976 SRX1247178 SRR2413310 16490898 16490898 1 TRUE FALSE 16220049 2275513443 NA NA 2015-09-15T13:15:33.000 2015-09-16T01:22:58.777 2015-09-16T01:27:21.980 284 GSM1881545 SRR2413310.bw Control sample 1 [C1-2_S1_L004] c("cell_type: HCET", "shRNA: doxycycline-inducible shRNA against PNN", "treatment: untreated") SRP063860 SRS1069977 SRX1247177 SRR2413309 17275322 17275322 1 TRUE FALSE 16997175 2384690262 NA NA 2015-09-15T13:15:31.000 2015-09-16T01:22:57.617 2015-09-16T01:27:21.617 284 GSM1881544 SRR2413309.bw Control sample 1 [C1-2_S1_L003] c("cell_type: HCET", "shRNA: doxycycline-inducible shRNA against PNN", "treatment: untreated") SRP063860 SRS1069978 SRX1247176 SRR2413308 16485832 16485832 1 TRUE FALSE 16176026 2269597714 NA NA 2015-09-15T13:15:30.000 2015-09-16T01:22:56.427 2015-09-16T01:27:21.260 284 GSM1881543 SRR2413308.bw Control sample 1 [C1-2_S1_L002] c("cell_type: HCET", "shRNA: doxycycline-inducible shRNA against PNN", "treatment: untreated") SRP063860 SRS1069979 SRX1247175 SRR2413307 16851444 16851444 1 TRUE FALSE 16548896 2321916885 NA NA 2015-09-15T13:15:28.000 2015-09-16T01:22:55.310 2015-09-16T01:27:20.970 284 GSM1881542 SRR2413307.bw Control sample 1 [C1-2_S1_L001] c("cell_type: HCET", "shRNA: doxycycline-inducible shRNA against PNN", "treatment: untreated")