project sample experiment run read_count_as_reported_by_sra reads_downloaded proportion_of_reads_reported_by_sra_downloaded paired_end sra_misreported_paired_end mapped_read_count auc sharq_beta_tissue sharq_beta_cell_type biosample_submission_date biosample_publication_date biosample_update_date avg_read_length geo_accession bigwig_file title characteristics SRP040998 SRS589600 SRX512230 SRR1220161 91148046 89387821 0.980688285956 TRUE TRUE 89352694 8030289337 NA NA 2014-04-07T10:11:27.410 2016-01-30T01:14:09.277 2016-01-30T01:21:22.183 176 GSM1363523 SRR1220161.bw HCC-C11-R-14P-11 c("tissue: HCC Non-recurrent Tumor's Adjacent Normal", "individual: HCC-C11", "gender: M", "age: 62", "hbv (pre-olt): Positive", "hbv (post-olt): Negative", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 90", "primary tumor size (cm): 3", "primary tumor grade: Ⅰ", "primary tumor cirrhosis: Yes", "recurrent tumor method: 0", "recurrent tumor organ: 0", "recurrent tumor size (cm): 0", "recurrent tumor content (%): 0", "recurrent tumor grade: 0", "recurrent tumor cirrhosis: 0", "glu: 12.01", "alt: 27", "ast: 34", "ggt: 75.8", "tb: 34.5", "db: 10.3", "alb: 40.5", "hgb: 137", "pt: 12.4", "hbsag: >240", "hbvdna: <1000", "afp: 5.4", "cea: 2.6", "ca199: 51.8", "bclc stage pre-ltx: A3", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589620 SRX512249 SRR1220180 89775742 87890604 0.979001699591 TRUE TRUE 87835173 7891874902 NA NA 2014-04-07T10:12:48.370 2016-01-30T01:15:42.513 2016-01-30T01:21:17.007 176 GSM1363542 SRR1220180.bw HCC-C8-R-14T-8 c("tissue: HCC Non-recurrent Tumor", "individual: HCC-C8", "gender: M", "age: 64", "hbv (pre-olt): Positive", "hbv (post-olt): Positive", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 95", "primary tumor size (cm): 1.5", "primary tumor grade: Ⅰ", "primary tumor cirrhosis: Yes", "recurrent tumor method: 0", "recurrent tumor organ: 0", "recurrent tumor size (cm): 0", "recurrent tumor content (%): 0", "recurrent tumor grade: 0", "recurrent tumor cirrhosis: 0", "glu: 4.73", "alt: 16", "ast: 25", "ggt: 56.4", "tb: 47.7", "db: 16.1", "alb: 30.8", "hgb: 148", "pt: 15.7", "hbsag: >240", "hbvdna: <1000", "afp: 62.5", "cea: 2.81", "ca199: 21", "bclc stage pre-ltx: A3", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589624 SRX512253 SRR1220184 90121356 88206338 0.978750674812 TRUE TRUE 88180557 7925183711 NA NA 2014-04-07T10:12:45.187 2016-01-30T01:15:46.930 2016-01-30T01:21:16.137 176 GSM1363546 SRR1220184.bw HCC-C6-R-14T-6 c("tissue: HCC Non-recurrent Tumor", "individual: HCC-C6", "gender: M", "age: 51", "hbv (pre-olt): Positive", "hbv (post-olt): Negative", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 85", "primary tumor size (cm): 3", "primary tumor grade: Ⅱ", "primary tumor cirrhosis: Yes", "recurrent tumor method: 0", "recurrent tumor organ: 0", "recurrent tumor size (cm): 0", "recurrent tumor content (%): 0", "recurrent tumor grade: 0", "recurrent tumor cirrhosis: 0", "glu: 7.52", "alt: 11", "ast: 14", "ggt: 5.8", "tb: 52.1", "db: 15.5", "alb: 31.6", "hgb: 75", "pt: 16.3", "hbsag: >240", "hbvdna: <1000", "afp: 137.5", "cea: 1.4", "ca199: 4.5", "bclc stage pre-ltx: A3", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589583 SRX512212 SRR1220143 104378146 101529681 0.972710139918 TRUE TRUE 101493358 9121999324 NA NA 2014-04-07T10:11:38.437 2016-01-30T01:13:50.097 2016-01-30T01:17:04.830 175 GSM1363505 SRR1220143.bw HCC1-R-13P-1 c("tissue: HCC Recurrent Tumor's Adjacent Normal", "individual: HCC1", "gender: M", "age: 48", "hbv (pre-olt): Positive", "hbv (post-olt): Negative", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 90", "primary tumor size (cm): 5", "primary tumor grade: III", "primary tumor cirrhosis: Yes", "recurrent tumor method: RFA", "recurrent tumor organ: liver", "recurrent tumor size (cm): 2", "recurrent tumor content (%): NA", "recurrent tumor grade: NA", "recurrent tumor cirrhosis: No", "glu: 5.19", "alt: 37", "ast: 39", "ggt: 133", "tb: 22.8", "db: 5.7", "alb: 40.6", "hgb: 131", "pt: 12.1", "hbsag: >240(+)", "hbvdna: <1000", "afp: 2935.9", "cea: 2.07", "ca199: 33.2", "bclc stage pre-ltx: A3", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589593 SRX512222 SRR1220153 104415112 101472515 0.971818284311 TRUE TRUE 101429682 9115977486 NA NA 2014-04-07T10:12:25.290 2016-01-30T01:14:00.643 2016-01-30T01:17:02.373 174 GSM1363515 SRR1220153.bw HCC5-R-13P-5 c("tissue: HCC Recurrent Tumor's Adjacent Normal", "individual: HCC5", "gender: M", "age: 67", "hbv (pre-olt): Negative", "hbv (post-olt): Negative", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 70", "primary tumor size (cm): 5", "primary tumor grade: II", "primary tumor cirrhosis: Yes", "recurrent tumor method: RFA", "recurrent tumor organ: liver", "recurrent tumor size (cm): 3", "recurrent tumor content (%): 60", "recurrent tumor grade: NA", "recurrent tumor cirrhosis: NA", "glu: 8.03", "alt: 54", "ast: 64", "ggt: 213.2", "tb: 56.7", "db: 22.9", "alb: 30.2", "hgb: 112", "pt: 12.9", "hbsag: <0.01(-)", "hbvdna: <500", "afp: >3000", "cea: 2.34", "ca199: 28.7", "bclc stage pre-ltx: B", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589595 SRX512224 SRR1220155 104365566 101417800 0.971755377631 TRUE TRUE 101389631 9111686795 NA NA 2014-04-07T10:12:05.247 2016-01-30T01:14:03.137 2016-01-30T01:17:01.923 174 GSM1363517 SRR1220155.bw HCC6-R-13P-6 c("tissue: HCC Recurrent Tumor's Adjacent Normal", "individual: HCC6", "gender: M", "age: 41", "hbv (pre-olt): Positive", "hbv (post-olt): Negative", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 40", "primary tumor size (cm): 7", "primary tumor grade: III", "primary tumor cirrhosis: Yes", "recurrent tumor method: VATS", "recurrent tumor organ: lung", "recurrent tumor size (cm): NA", "recurrent tumor content (%): 70", "recurrent tumor grade: NA", "recurrent tumor cirrhosis: NA", "glu: 4.48", "alt: 28", "ast: 30", "ggt: 39.7", "tb: 10", "db: 4.2", "alb: 47.4", "hgb: 114", "pt: 10.8", "hbsag: >250(+)", "hbvdna: <500", "afp: 126", "cea: NA", "ca199: NA", "bclc stage pre-ltx: B", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589619 SRX512248 SRR1220179 93708114 90862834 0.969636780866 TRUE TRUE 90826344 8161737099 NA NA 2014-04-07T10:12:31.283 2016-01-30T01:15:41.347 2016-01-30T01:21:17.240 174 GSM1363541 SRR1220179.bw HCC-C8-R-14P-8 c("tissue: HCC Non-recurrent Tumor's Adjacent Normal", "individual: HCC-C8", "gender: M", "age: 64", "hbv (pre-olt): Positive", "hbv (post-olt): Positive", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 95", "primary tumor size (cm): 1.5", "primary tumor grade: Ⅰ", "primary tumor cirrhosis: Yes", "recurrent tumor method: 0", "recurrent tumor organ: 0", "recurrent tumor size (cm): 0", "recurrent tumor content (%): 0", "recurrent tumor grade: 0", "recurrent tumor cirrhosis: 0", "glu: 4.73", "alt: 16", "ast: 25", "ggt: 56.4", "tb: 47.7", "db: 16.1", "alb: 30.8", "hgb: 148", "pt: 15.7", "hbsag: >240", "hbvdna: <1000", "afp: 62.5", "cea: 2.81", "ca199: 21", "bclc stage pre-ltx: A3", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589587 SRX512216 SRR1220147 103993628 100736852 0.968682927381 TRUE TRUE 100674524 9047812289 NA NA 2014-04-07T10:11:59.720 2016-01-30T01:13:54.480 2016-01-30T01:17:03.857 174 GSM1363509 SRR1220147.bw HCC2-R-13P-2 c("tissue: HCC Recurrent Tumor's Adjacent Normal", "individual: HCC2", "gender: M", "age: 43", "hbv (pre-olt): Positive", "hbv (post-olt): Negative", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 60", "primary tumor size (cm): 9", "primary tumor grade: II", "primary tumor cirrhosis: Yes", "recurrent tumor method: RFA", "recurrent tumor organ: liver", "recurrent tumor size (cm): NA", "recurrent tumor content (%): NA", "recurrent tumor grade: NA", "recurrent tumor cirrhosis: NA", "glu: 5.42", "alt: 19", "ast: 33", "ggt: 123.4", "tb: 20.4", "db: 6.7", "alb: 41.6", "hgb: 140", "pt: 11.9", "hbsag: >240(+)", "hbvdna: 6210", "afp: 1461.1", "cea: 4.41", "ca199: <0.8", "bclc stage pre-ltx: B", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589621 SRX512250 SRR1220181 93381482 90394591 0.96801409727 TRUE TRUE 90363890 8121287808 NA NA 2014-04-07T10:12:52.160 2016-01-30T01:15:43.413 2016-01-30T01:21:16.770 174 GSM1363543 SRR1220181.bw HCC-C9-R-14P-9 c("tissue: HCC Non-recurrent Tumor's Adjacent Normal", "individual: HCC-C9", "gender: M", "age: 40", "hbv (pre-olt): Positive", "hbv (post-olt): NA", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 80", "primary tumor size (cm): 1", "primary tumor grade: Ⅱ", "primary tumor cirrhosis: Yes", "recurrent tumor method: 0", "recurrent tumor organ: 0", "recurrent tumor size (cm): 0", "recurrent tumor content (%): 0", "recurrent tumor grade: 0", "recurrent tumor cirrhosis: 0", "glu: 5.32", "alt: 16", "ast: 18", "ggt: 35.3", "tb: 19.7", "db: 5.2", "alb: 42.7", "hgb: 158", "pt: 11.9", "hbsag: +", "hbvdna: 1290", "afp: 9.2", "cea: 4.85", "ca199: 24.6", "bclc stage pre-ltx: A3", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589585 SRX512214 SRR1220145 103539194 100219191 0.967934818963 TRUE TRUE 100179260 9003613421 NA NA 2014-04-07T10:12:02.480 2016-01-30T01:13:52.237 2016-01-30T01:17:04.357 174 GSM1363507 SRR1220145.bw HCC10-R-13P-10 c("tissue: HCC Recurrent Tumor's Adjacent Normal", "individual: HCC10", "gender: M", "age: 59", "hbv (pre-olt): Positive", "hbv (post-olt): Negative", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 80", "primary tumor size (cm): 4", "primary tumor grade: III", "primary tumor cirrhosis: Yes", "recurrent tumor method: RFA", "recurrent tumor organ: liver", "recurrent tumor size (cm): 1", "recurrent tumor content (%): NA", "recurrent tumor grade: NA", "recurrent tumor cirrhosis: No", "glu: 5.03", "alt: 71", "ast: 96", "ggt: 79.5", "tb: 29.6", "db: 10.7", "alb: 40.2", "hgb: 136", "pt: 12.7", "hbsag: >250(+)", "hbvdna: <500", "afp: 1888.2", "cea: 3.97", "ca199: 70.8", "bclc stage pre-ltx: A3", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589623 SRX512252 SRR1220183 93899042 90801703 0.96701415761 TRUE TRUE 90761465 8156583410 NA NA 2014-04-07T10:12:54.777 2016-01-30T01:15:45.537 2016-01-30T01:21:16.337 174 GSM1363545 SRR1220183.bw HCC-C6-R-14P-6 c("tissue: HCC Non-recurrent Tumor's Adjacent Normal", "individual: HCC-C6", "gender: M", "age: 51", "hbv (pre-olt): Positive", "hbv (post-olt): Negative", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 85", "primary tumor size (cm): 3", "primary tumor grade: Ⅱ", "primary tumor cirrhosis: Yes", "recurrent tumor method: 0", "recurrent tumor organ: 0", "recurrent tumor size (cm): 0", "recurrent tumor content (%): 0", "recurrent tumor grade: 0", "recurrent tumor cirrhosis: 0", "glu: 7.52", "alt: 11", "ast: 14", "ggt: 5.8", "tb: 52.1", "db: 15.5", "alb: 31.6", "hgb: 75", "pt: 16.3", "hbsag: >240", "hbvdna: <1000", "afp: 137.5", "cea: 1.4", "ca199: 4.5", "bclc stage pre-ltx: A3", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589609 SRX512238 SRR1220169 93913676 90756375 0.966380817635 TRUE TRUE 90727817 8153911426 NA NA 2014-04-07T10:11:43.297 2016-01-30T01:13:48.640 2016-01-30T01:16:59.190 173 GSM1363531 SRR1220169.bw HCC-C15-R-14P-15 c("tissue: HCC Non-recurrent Tumor's Adjacent Normal", "individual: HCC-C15", "gender: M", "age: 49", "hbv (pre-olt): Positive", "hbv (post-olt): Negative", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 90", "primary tumor size (cm): 5", "primary tumor grade: Ⅱ", "primary tumor cirrhosis: Yes", "recurrent tumor method: 0", "recurrent tumor organ: 0", "recurrent tumor size (cm): 0", "recurrent tumor content (%): 0", "recurrent tumor grade: 0", "recurrent tumor cirrhosis: 0", "glu: 8.64", "alt: 34", "ast: 24", "ggt: 171.6", "tb: 33.3", "db: 10.5", "alb: 45.6", "hgb: 146", "pt: 11.5", "hbsag: >240", "hbvdna: <500", "afp: NA", "cea: NA", "ca199: NA", "bclc stage pre-ltx: B", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589622 SRX512251 SRR1220182 95397692 92181084 0.966282119278 TRUE TRUE 92144368 8281317256 NA NA 2014-04-07T10:12:29.980 2016-01-30T01:15:44.560 2016-01-30T01:21:16.550 173 GSM1363544 SRR1220182.bw HCC-C9-R-14T-9 c("tissue: HCC Non-recurrent Tumor", "individual: HCC-C9", "gender: M", "age: 40", "hbv (pre-olt): Positive", "hbv (post-olt): NA", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 80", "primary tumor size (cm): 1", "primary tumor grade: Ⅱ", "primary tumor cirrhosis: Yes", "recurrent tumor method: 0", "recurrent tumor organ: 0", "recurrent tumor size (cm): 0", "recurrent tumor content (%): 0", "recurrent tumor grade: 0", "recurrent tumor cirrhosis: 0", "glu: 5.32", "alt: 16", "ast: 18", "ggt: 35.3", "tb: 19.7", "db: 5.2", "alb: 42.7", "hgb: 158", "pt: 11.9", "hbsag: +", "hbvdna: 1290", "afp: 9.2", "cea: 4.85", "ca199: 24.6", "bclc stage pre-ltx: A3", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589603 SRX512232 SRR1220163 94270314 91068287 0.966033559621 TRUE TRUE 91038128 8181232054 NA NA 2014-04-07T10:11:48.210 2016-01-30T01:14:11.183 2016-01-30T01:21:19.937 173 GSM1363525 SRR1220163.bw HCC-C12-R-14P-12 c("tissue: HCC Non-recurrent Tumor's Adjacent Normal", "individual: HCC-C12", "gender: M", "age: 40", "hbv (pre-olt): Positive", "hbv (post-olt): Positive", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 70", "primary tumor size (cm): 2.5", "primary tumor grade: Ⅱ-Ⅲ", "primary tumor cirrhosis: Yes", "recurrent tumor method: 0", "recurrent tumor organ: 0", "recurrent tumor size (cm): 0", "recurrent tumor content (%): 0", "recurrent tumor grade: 0", "recurrent tumor cirrhosis: 0", "glu: NA", "alt: 38", "ast: 19", "ggt: 47.3", "tb: 12.7", "db: 4", "alb: 43.5", "hgb: 150", "pt: 11.2", "hbsag: >240", "hbvdna: 110000", "afp: 210.8", "cea: 1.85", "ca199: 21.3", "bclc stage pre-ltx: A2", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589598 SRX512227 SRR1220158 105387774 101802278 0.96597806497 TRUE TRUE 101772314 9148447935 NA NA 2014-04-07T10:12:07.710 2016-02-02T01:18:05.027 2016-02-02T01:21:46.943 173 GSM1363520 SRR1220158.bw HCC7-R-13T-18 c("tissue: HCC Recurrent Tumor", "individual: HCC7", "gender: not collected", "age: #N/A", "hbv (pre-olt): #N/A", "hbv (post-olt): #N/A", "primary tumor and nat rna: #N/A", "primary tumor biopsy method: #N/A", "primary tumor content (%): #N/A", "primary tumor size (cm): #N/A", "primary tumor grade: #N/A", "primary tumor cirrhosis: #N/A", "recurrent tumor method: #N/A", "recurrent tumor organ: #N/A", "recurrent tumor size (cm): #N/A", "recurrent tumor content (%): #N/A", "recurrent tumor grade: #N/A", "recurrent tumor cirrhosis: #N/A", "glu: #N/A", "alt: #N/A", "ast: #N/A", "ggt: #N/A", "tb: #N/A", "db: #N/A", "alb: #N/A", "hgb: #N/A", "pt: #N/A", "hbsag: #N/A", "hbvdna: #N/A", "afp: #N/A", "cea: #N/A", "ca199: #N/A", "bclc stage pre-ltx: #N/A", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589605 SRX512234 SRR1220165 93958894 90689391 0.965202836466 TRUE TRUE 90647960 8145862260 NA NA 2014-04-07T10:11:52.973 2016-01-30T01:13:42.827 2016-01-30T01:17:01.423 173 GSM1363527 SRR1220165.bw HCC-C13-R-14P-13 c("tissue: HCC Non-recurrent Tumor's Adjacent Normal", "individual: HCC-C13", "gender: M", "age: 49", "hbv (pre-olt): Positive", "hbv (post-olt): Negative", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 90", "primary tumor size (cm): 3", "primary tumor grade: I-II", "primary tumor cirrhosis: Yes", "recurrent tumor method: 0", "recurrent tumor organ: 0", "recurrent tumor size (cm): 0", "recurrent tumor content (%): 0", "recurrent tumor grade: 0", "recurrent tumor cirrhosis: 0", "glu: 4.19", "alt: 26", "ast: 38", "ggt: 55", "tb: 22.1", "db: 3.5", "alb: 25.8", "hgb: 130", "pt: 12.1", "hbsag: >240", "hbvdna: <500", "afp: 4.3", "cea: 1.97", "ca199: 21.5", "bclc stage pre-ltx: C", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589588 SRX512217 SRR1220148 104645938 100978846 0.964957149125 TRUE TRUE 100928332 9068188501 NA NA 2014-04-07T10:12:20.240 2016-01-30T01:13:55.523 2016-01-30T01:17:03.617 173 GSM1363510 SRR1220148.bw HCC2-R-13T-2 c("tissue: HCC Recurrent Tumor", "individual: HCC2", "gender: M", "age: 43", "hbv (pre-olt): Positive", "hbv (post-olt): Negative", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 60", "primary tumor size (cm): 9", "primary tumor grade: II", "primary tumor cirrhosis: Yes", "recurrent tumor method: RFA", "recurrent tumor organ: liver", "recurrent tumor size (cm): NA", "recurrent tumor content (%): NA", "recurrent tumor grade: NA", "recurrent tumor cirrhosis: NA", "glu: 5.42", "alt: 19", "ast: 33", "ggt: 123.4", "tb: 20.4", "db: 6.7", "alb: 41.6", "hgb: 140", "pt: 11.9", "hbsag: >240(+)", "hbvdna: 6210", "afp: 1461.1", "cea: 4.41", "ca199: <0.8", "bclc stage pre-ltx: B", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589602 SRX512231 SRR1220162 93623270 90342314 0.964955763669 TRUE TRUE 90314498 8116813243 NA NA 2014-04-07T10:11:50.753 2016-01-30T01:14:10.280 2016-01-30T01:21:21.650 173 GSM1363524 SRR1220162.bw HCC-C11-R-14T-11 c("tissue: HCC Non-recurrent Tumor", "individual: HCC-C11", "gender: M", "age: 62", "hbv (pre-olt): Positive", "hbv (post-olt): Negative", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 90", "primary tumor size (cm): 3", "primary tumor grade: Ⅰ", "primary tumor cirrhosis: Yes", "recurrent tumor method: 0", "recurrent tumor organ: 0", "recurrent tumor size (cm): 0", "recurrent tumor content (%): 0", "recurrent tumor grade: 0", "recurrent tumor cirrhosis: 0", "glu: 12.01", "alt: 27", "ast: 34", "ggt: 75.8", "tb: 34.5", "db: 10.3", "alb: 40.5", "hgb: 137", "pt: 12.4", "hbsag: >240", "hbvdna: <1000", "afp: 5.4", "cea: 2.6", "ca199: 51.8", "bclc stage pre-ltx: A3", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589613 SRX512242 SRR1220173 92682496 89415313 0.964748651137 TRUE TRUE 89382323 8032493253 NA NA 2014-04-07T10:11:33.487 2016-01-30T01:15:35.033 2016-01-30T01:21:18.660 173 GSM1363535 SRR1220173.bw HCC-C18-R-14P-18 c("tissue: HCC Non-recurrent Tumor's Adjacent Normal", "individual: HCC-C18", "gender: M", "age: 57", "hbv (pre-olt): Positive", "hbv (post-olt): Negative", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 95", "primary tumor size (cm): 5", "primary tumor grade: Ⅰ", "primary tumor cirrhosis: Yes", "recurrent tumor method: 0", "recurrent tumor organ: 0", "recurrent tumor size (cm): 0", "recurrent tumor content (%): 0", "recurrent tumor grade: 0", "recurrent tumor cirrhosis: 0", "glu: 4.95", "alt: 43", "ast: 38", "ggt: 139.9", "tb: 16.3", "db: 6.5", "alb: 39.2", "hgb: 150", "pt: 13.4", "hbsag: >250", "hbvdna: 20100", "afp: 6.6", "cea: 1.85", "ca199: 45.6", "bclc stage pre-ltx: A2", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589614 SRX512244 SRR1220175 93213194 89915613 0.964623237779 TRUE TRUE 89876490 8076545491 NA NA 2014-04-07T10:12:36.737 2016-01-30T01:15:37.297 2016-01-30T01:21:18.437 173 GSM1363537 SRR1220175.bw HCC-C19-R-14P-19 c("tissue: HCC Non-recurrent Tumor's Adjacent Normal", "individual: HCC-C19", "gender: M", "age: 41", "hbv (pre-olt): Positive", "hbv (post-olt): Positive", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 90", "primary tumor size (cm): 4", "primary tumor grade: Ⅱ-Ⅲ", "primary tumor cirrhosis: Yes", "recurrent tumor method: 0", "recurrent tumor organ: 0", "recurrent tumor size (cm): 0", "recurrent tumor content (%): 0", "recurrent tumor grade: 0", "recurrent tumor cirrhosis: 0", "glu: 4.85", "alt: 12", "ast: 16", "ggt: 21.1", "tb: 21.5", "db: 7", "alb: 46", "hgb: 142", "pt: 12.9", "hbsag: 219.91", "hbvdna: <500", "afp: 220.9", "cea: 2.01", "ca199: 19", "bclc stage pre-ltx: B", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589597 SRX512226 SRR1220157 105205538 101458045 0.964379318131 TRUE TRUE 101418243 9114839896 NA NA 2014-04-07T10:12:38.523 2016-02-02T01:18:03.230 2016-02-02T01:21:47.260 173 GSM1363519 SRR1220157.bw HCC7-R-13P-18 c("tissue: HCC Recurrent Tumor's Adjacent Normal", "individual: HCC7", "gender: not collected", "age: #N/A", "hbv (pre-olt): #N/A", "hbv (post-olt): #N/A", "primary tumor and nat rna: #N/A", "primary tumor biopsy method: #N/A", "primary tumor content (%): #N/A", "primary tumor size (cm): #N/A", "primary tumor grade: #N/A", "primary tumor cirrhosis: #N/A", "recurrent tumor method: #N/A", "recurrent tumor organ: #N/A", "recurrent tumor size (cm): #N/A", "recurrent tumor content (%): #N/A", "recurrent tumor grade: #N/A", "recurrent tumor cirrhosis: #N/A", "glu: #N/A", "alt: #N/A", "ast: #N/A", "ggt: #N/A", "tb: #N/A", "db: #N/A", "alb: #N/A", "hgb: #N/A", "pt: #N/A", "hbsag: #N/A", "hbvdna: #N/A", "afp: #N/A", "cea: #N/A", "ca199: #N/A", "bclc stage pre-ltx: #N/A", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589584 SRX512213 SRR1220144 105332758 101505532 0.963665377489 TRUE TRUE 101445752 9116890832 NA NA 2014-04-07T10:11:54.703 2016-01-30T01:13:51.323 2016-01-30T01:17:04.590 173 GSM1363506 SRR1220144.bw HCC1-R-13T-1 c("tissue: HCC Recurrent Tumor", "individual: HCC1", "gender: M", "age: 48", "hbv (pre-olt): Positive", "hbv (post-olt): Negative", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 90", "primary tumor size (cm): 5", "primary tumor grade: III", "primary tumor cirrhosis: Yes", "recurrent tumor method: RFA", "recurrent tumor organ: liver", "recurrent tumor size (cm): 2", "recurrent tumor content (%): NA", "recurrent tumor grade: NA", "recurrent tumor cirrhosis: No", "glu: 5.19", "alt: 37", "ast: 39", "ggt: 133", "tb: 22.8", "db: 5.7", "alb: 40.6", "hgb: 131", "pt: 12.1", "hbsag: >240(+)", "hbvdna: <1000", "afp: 2935.9", "cea: 2.07", "ca199: 33.2", "bclc stage pre-ltx: A3", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589606 SRX512235 SRR1220166 93530546 90125352 0.963592706922 TRUE TRUE 90089960 8096827412 NA NA 2014-04-07T10:12:10.420 2016-01-30T01:13:44.967 2016-01-30T01:17:00.173 173 GSM1363528 SRR1220166.bw HCC-C13-R-14T-13 c("tissue: HCC Non-recurrent Tumor", "individual: HCC-C13", "gender: M", "age: 49", "hbv (pre-olt): Positive", "hbv (post-olt): Negative", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 90", "primary tumor size (cm): 3", "primary tumor grade: I-II", "primary tumor cirrhosis: Yes", "recurrent tumor method: 0", "recurrent tumor organ: 0", "recurrent tumor size (cm): 0", "recurrent tumor content (%): 0", "recurrent tumor grade: 0", "recurrent tumor cirrhosis: 0", "glu: 4.19", "alt: 26", "ast: 38", "ggt: 55", "tb: 22.1", "db: 3.5", "alb: 25.8", "hgb: 130", "pt: 12.1", "hbsag: >240", "hbvdna: <500", "afp: 4.3", "cea: 1.97", "ca199: 21.5", "bclc stage pre-ltx: C", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589611 SRX512240 SRR1220171 93546752 90132292 0.96349996203 TRUE TRUE 90089183 8094528480 NA NA 2014-04-07T10:12:53.507 2016-01-30T01:14:14.010 2016-01-30T01:21:19.103 173 GSM1363533 SRR1220171.bw HCC-C16-R-14P-16 c("tissue: HCC Non-recurrent Tumor's Adjacent Normal", "individual: HCC-C16", "gender: M", "age: 49", "hbv (pre-olt): Positive", "hbv (post-olt): NA", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 80", "primary tumor size (cm): 5", "primary tumor grade: Ⅱ-Ⅲ", "primary tumor cirrhosis: Yes", "recurrent tumor method: 0", "recurrent tumor organ: 0", "recurrent tumor size (cm): 0", "recurrent tumor content (%): 0", "recurrent tumor grade: 0", "recurrent tumor cirrhosis: 0", "glu: 4.89", "alt: 52", "ast: 140", "ggt: 68.9", "tb: 64.9", "db: 23.2", "alb: 30", "hgb: 92", "pt: 14.9", "hbsag: >240", "hbvdna: <500", "afp: 128.9", "cea: 2.11", "ca199: 29.5", "bclc stage pre-ltx: A3", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589617 SRX512246 SRR1220177 93283548 89838751 0.963071762665 TRUE TRUE 89797634 8069776387 NA NA 2014-04-07T10:12:41.257 2016-01-30T01:15:39.267 2016-01-30T01:21:17.747 173 GSM1363539 SRR1220177.bw HCC-C2-R-14P-2 c("tissue: HCC Non-recurrent Tumor's Adjacent Normal", "individual: HCC-C2", "gender: M", "age: 55", "hbv (pre-olt): Positive", "hbv (post-olt): Negative", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 90", "primary tumor size (cm): 5", "primary tumor grade: I-II", "primary tumor cirrhosis: Yes", "recurrent tumor method: 0", "recurrent tumor organ: 0", "recurrent tumor size (cm): 0", "recurrent tumor content (%): 0", "recurrent tumor grade: 0", "recurrent tumor cirrhosis: 0", "glu: 4.55", "alt: 78", "ast: 134", "ggt: 64.2", "tb: 35.8", "db: 14.1", "alb: 22.3", "hgb: 113", "pt: 17", "hbsag: >240", "hbvdna: 1040000", "afp: 5.2", "cea: 4.79", "ca199: 72.6", "bclc stage pre-ltx: D", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589618 SRX512247 SRR1220178 93242872 89798448 0.963059653504 TRUE TRUE 89765946 8066136999 NA NA 2014-04-07T10:12:43.860 2016-01-30T01:15:40.337 2016-01-30T01:21:17.477 173 GSM1363540 SRR1220178.bw HCC-C2-R-14T-2 c("tissue: HCC Non-recurrent Tumor", "individual: HCC-C2", "gender: M", "age: 55", "hbv (pre-olt): Positive", "hbv (post-olt): Negative", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 90", "primary tumor size (cm): 5", "primary tumor grade: I-II", "primary tumor cirrhosis: Yes", "recurrent tumor method: 0", "recurrent tumor organ: 0", "recurrent tumor size (cm): 0", "recurrent tumor content (%): 0", "recurrent tumor grade: 0", "recurrent tumor cirrhosis: 0", "glu: 4.55", "alt: 78", "ast: 134", "ggt: 64.2", "tb: 35.8", "db: 14.1", "alb: 22.3", "hgb: 113", "pt: 17", "hbsag: >240", "hbvdna: 1040000", "afp: 5.2", "cea: 4.79", "ca199: 72.6", "bclc stage pre-ltx: D", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589616 SRX512245 SRR1220176 92924898 89482035 0.962950048113 TRUE TRUE 89452234 8038617253 NA NA 2014-04-07T10:12:42.567 2016-01-30T01:15:38.317 2016-01-30T01:21:18.007 173 GSM1363538 SRR1220176.bw HCC-C19-R-14T-19 c("tissue: HCC Non-recurrent Tumor", "individual: HCC-C19", "gender: M", "age: 41", "hbv (pre-olt): Positive", "hbv (post-olt): Positive", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 90", "primary tumor size (cm): 4", "primary tumor grade: Ⅱ-Ⅲ", "primary tumor cirrhosis: Yes", "recurrent tumor method: 0", "recurrent tumor organ: 0", "recurrent tumor size (cm): 0", "recurrent tumor content (%): 0", "recurrent tumor grade: 0", "recurrent tumor cirrhosis: 0", "glu: 4.85", "alt: 12", "ast: 16", "ggt: 21.1", "tb: 21.5", "db: 7", "alb: 46", "hgb: 142", "pt: 12.9", "hbsag: 219.91", "hbvdna: <500", "afp: 220.9", "cea: 2.01", "ca199: 19", "bclc stage pre-ltx: B", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589608 SRX512237 SRR1220168 93488786 90024329 0.96294253944 TRUE TRUE 89980656 8086994779 NA NA 2014-04-07T10:11:45.700 2016-01-30T01:13:47.263 2016-01-30T01:16:59.590 173 GSM1363530 SRR1220168.bw HCC-C14-R-14T-14 c("tissue: HCC Non-recurrent Tumor", "individual: HCC-C14", "gender: M", "age: 59", "hbv (pre-olt): Positive", "hbv (post-olt): NA", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 60", "primary tumor size (cm): 7", "primary tumor grade: Ⅱ", "primary tumor cirrhosis: Yes", "recurrent tumor method: 0", "recurrent tumor organ: 0", "recurrent tumor size (cm): 0", "recurrent tumor content (%): 0", "recurrent tumor grade: 0", "recurrent tumor cirrhosis: 0", "glu: 5.46", "alt: 197", "ast: 296", "ggt: 53.6", "tb: 74.7", "db: 25.1", "alb: 31.4", "hgb: 118", "pt: 15.8", "hbsag: >240", "hbvdna: 9000000", "afp: 240.7", "cea: 0.87", "ca199: 27.1", "bclc stage pre-ltx: B", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589604 SRX512233 SRR1220164 93029544 89429471 0.961301831169 TRUE TRUE 89399386 8033597959 NA NA 2014-04-07T10:11:30.257 2016-01-30T01:14:12.160 2016-01-30T01:21:19.707 173 GSM1363526 SRR1220164.bw HCC-C12-R-14T-12 c("tissue: HCC Non-recurrent Tumor", "individual: HCC-C12", "gender: M", "age: 40", "hbv (pre-olt): Positive", "hbv (post-olt): Positive", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 70", "primary tumor size (cm): 2.5", "primary tumor grade: Ⅱ-Ⅲ", "primary tumor cirrhosis: Yes", "recurrent tumor method: 0", "recurrent tumor organ: 0", "recurrent tumor size (cm): 0", "recurrent tumor content (%): 0", "recurrent tumor grade: 0", "recurrent tumor cirrhosis: 0", "glu: NA", "alt: 38", "ast: 19", "ggt: 47.3", "tb: 12.7", "db: 4", "alb: 43.5", "hgb: 150", "pt: 11.2", "hbsag: >240", "hbvdna: 110000", "afp: 210.8", "cea: 1.85", "ca199: 21.3", "bclc stage pre-ltx: A2", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589615 SRX512243 SRR1220174 93139478 89511429 0.961047140505 TRUE TRUE 89477761 8041010709 NA NA 2014-04-07T10:12:22.797 2016-01-30T01:15:36.227 2016-01-30T01:21:18.203 172 GSM1363536 SRR1220174.bw HCC-C18-R-14T-18 c("tissue: HCC Non-recurrent Tumor", "individual: HCC-C18", "gender: M", "age: 57", "hbv (pre-olt): Positive", "hbv (post-olt): Negative", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 95", "primary tumor size (cm): 5", "primary tumor grade: Ⅰ", "primary tumor cirrhosis: Yes", "recurrent tumor method: 0", "recurrent tumor organ: 0", "recurrent tumor size (cm): 0", "recurrent tumor content (%): 0", "recurrent tumor grade: 0", "recurrent tumor cirrhosis: 0", "glu: 4.95", "alt: 43", "ast: 38", "ggt: 139.9", "tb: 16.3", "db: 6.5", "alb: 39.2", "hgb: 150", "pt: 13.4", "hbsag: >250", "hbvdna: 20100", "afp: 6.6", "cea: 1.85", "ca199: 45.6", "bclc stage pre-ltx: A2", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589586 SRX512215 SRR1220146 104359694 100207159 0.960209398468 TRUE TRUE 100137796 9000567210 NA NA 2014-04-07T10:11:35.910 2016-01-30T01:13:53.327 2016-01-30T01:17:04.103 172 GSM1363508 SRR1220146.bw HCC10-R-13T-10 c("tissue: HCC Recurrent Tumor", "individual: HCC10", "gender: M", "age: 59", "hbv (pre-olt): Positive", "hbv (post-olt): Negative", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 80", "primary tumor size (cm): 4", "primary tumor grade: III", "primary tumor cirrhosis: Yes", "recurrent tumor method: RFA", "recurrent tumor organ: liver", "recurrent tumor size (cm): 1", "recurrent tumor content (%): NA", "recurrent tumor grade: NA", "recurrent tumor cirrhosis: No", "glu: 5.03", "alt: 71", "ast: 96", "ggt: 79.5", "tb: 29.6", "db: 10.7", "alb: 40.2", "hgb: 136", "pt: 12.7", "hbsag: >250(+)", "hbvdna: <500", "afp: 1888.2", "cea: 3.97", "ca199: 70.8", "bclc stage pre-ltx: A3", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589590 SRX512219 SRR1220150 103683992 99502306 0.959668933272 TRUE TRUE 99457918 8938082591 NA NA 2014-04-07T10:12:15.300 2016-01-30T01:13:57.370 2016-01-30T01:17:03.130 172 GSM1363512 SRR1220150.bw HCC3-R-13T-3 c("tissue: HCC Recurrent Tumor", "individual: HCC3", "gender: M", "age: 42", "hbv (pre-olt): Positive", "hbv (post-olt): Negative", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 80", "primary tumor size (cm): 6", "primary tumor grade: III", "primary tumor cirrhosis: Yes", "recurrent tumor method: RFA", "recurrent tumor organ: liver", "recurrent tumor size (cm): 1.5", "recurrent tumor content (%): NA", "recurrent tumor grade: NA", "recurrent tumor cirrhosis: Yes", "glu: 7.23", "alt: 30", "ast: 56", "ggt: 198.7", "tb: 34.8", "db: 15.5", "alb: 33.9", "hgb: 144", "pt: 12.3", "hbsag: >240(+)", "hbvdna: <500", "afp: >3000", "cea: 3.3", "ca199: 119.8", "bclc stage pre-ltx: B", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589610 SRX512239 SRR1220170 92781350 89034599 0.959617412336 TRUE TRUE 89006750 7998512214 NA NA 2014-04-07T10:12:27.820 2016-01-30T01:14:13.053 2016-01-30T01:21:19.417 172 GSM1363532 SRR1220170.bw HCC-C15-R-14T-15 c("tissue: HCC Non-recurrent Tumor", "individual: HCC-C15", "gender: M", "age: 49", "hbv (pre-olt): Positive", "hbv (post-olt): Negative", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 90", "primary tumor size (cm): 5", "primary tumor grade: Ⅱ", "primary tumor cirrhosis: Yes", "recurrent tumor method: 0", "recurrent tumor organ: 0", "recurrent tumor size (cm): 0", "recurrent tumor content (%): 0", "recurrent tumor grade: 0", "recurrent tumor cirrhosis: 0", "glu: 8.64", "alt: 34", "ast: 24", "ggt: 171.6", "tb: 33.3", "db: 10.5", "alb: 45.6", "hgb: 146", "pt: 11.5", "hbsag: >240", "hbvdna: <500", "afp: NA", "cea: NA", "ca199: NA", "bclc stage pre-ltx: B", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589596 SRX512225 SRR1220156 103260098 99087437 0.959590770483 TRUE TRUE 99041177 8900255451 NA NA 2014-04-07T10:12:33.650 2016-01-30T01:14:04.137 2016-01-30T01:17:01.680 172 GSM1363518 SRR1220156.bw HCC6-R-13T-6 c("tissue: HCC Recurrent Tumor", "individual: HCC6", "gender: M", "age: 41", "hbv (pre-olt): Positive", "hbv (post-olt): Negative", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 40", "primary tumor size (cm): 7", "primary tumor grade: III", "primary tumor cirrhosis: Yes", "recurrent tumor method: VATS", "recurrent tumor organ: lung", "recurrent tumor size (cm): NA", "recurrent tumor content (%): 70", "recurrent tumor grade: NA", "recurrent tumor cirrhosis: NA", "glu: 4.48", "alt: 28", "ast: 30", "ggt: 39.7", "tb: 10", "db: 4.2", "alb: 47.4", "hgb: 114", "pt: 10.8", "hbsag: >250(+)", "hbvdna: <500", "afp: 126", "cea: NA", "ca199: NA", "bclc stage pre-ltx: B", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589594 SRX512223 SRR1220154 103965766 99761227 0.959558428108 TRUE TRUE 99707477 8959968024 NA NA 2014-04-07T10:12:17.823 2016-01-30T01:14:01.790 2016-01-30T01:17:02.127 172 GSM1363516 SRR1220154.bw HCC5-R-13T-5 c("tissue: HCC Recurrent Tumor", "individual: HCC5", "gender: M", "age: 67", "hbv (pre-olt): Negative", "hbv (post-olt): Negative", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 70", "primary tumor size (cm): 5", "primary tumor grade: II", "primary tumor cirrhosis: Yes", "recurrent tumor method: RFA", "recurrent tumor organ: liver", "recurrent tumor size (cm): 3", "recurrent tumor content (%): 60", "recurrent tumor grade: NA", "recurrent tumor cirrhosis: NA", "glu: 8.03", "alt: 54", "ast: 64", "ggt: 213.2", "tb: 56.7", "db: 22.9", "alb: 30.2", "hgb: 112", "pt: 12.9", "hbsag: <0.01(-)", "hbvdna: <500", "afp: >3000", "cea: 2.34", "ca199: 28.7", "bclc stage pre-ltx: B", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589592 SRX512221 SRR1220152 104017928 99796185 0.959413313828 TRUE TRUE 99756681 8964841371 NA NA 2014-04-07T10:12:12.910 2016-01-30T01:13:59.373 2016-01-30T01:17:02.643 172 GSM1363514 SRR1220152.bw HCC4-R-13T-4 c("tissue: HCC Recurrent Tumor", "individual: HCC4", "gender: M", "age: 59", "hbv (pre-olt): Positive", "hbv (post-olt): Positive", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 90", "primary tumor size (cm): 8", "primary tumor grade: II", "primary tumor cirrhosis: No", "recurrent tumor method: RFA", "recurrent tumor organ: liver", "recurrent tumor size (cm): 2.5", "recurrent tumor content (%): NA", "recurrent tumor grade: NA", "recurrent tumor cirrhosis: No", "glu: 5.4", "alt: 20", "ast: 19", "ggt: 37.7", "tb: 17.4", "db: 3.9", "alb: 43.7", "hgb: 145", "pt: 11.6", "hbsag: 15.22(+)", "hbvdna: <500", "afp: 2.5", "cea: 1.27", "ca199: 8.4", "bclc stage pre-ltx: B", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589607 SRX512236 SRR1220167 92781162 88959638 0.958811423379 TRUE TRUE 88911610 7989373159 NA NA 2014-04-07T10:12:46.787 2016-01-30T01:13:45.940 2016-01-30T01:16:59.863 172 GSM1363529 SRR1220167.bw HCC-C14-R-14P-14 c("tissue: HCC Non-recurrent Tumor's Adjacent Normal", "individual: HCC-C14", "gender: M", "age: 59", "hbv (pre-olt): Positive", "hbv (post-olt): NA", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 60", "primary tumor size (cm): 7", "primary tumor grade: Ⅱ", "primary tumor cirrhosis: Yes", "recurrent tumor method: 0", "recurrent tumor organ: 0", "recurrent tumor size (cm): 0", "recurrent tumor content (%): 0", "recurrent tumor grade: 0", "recurrent tumor cirrhosis: 0", "glu: 5.46", "alt: 197", "ast: 296", "ggt: 53.6", "tb: 74.7", "db: 25.1", "alb: 31.4", "hgb: 118", "pt: 15.8", "hbsag: >240", "hbvdna: 9000000", "afp: 240.7", "cea: 0.87", "ca199: 27.1", "bclc stage pre-ltx: B", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589612 SRX512241 SRR1220172 94524382 90625700 0.958754747532 TRUE TRUE 90595576 8140967740 NA NA 2014-04-07T10:11:40.883 2016-01-30T01:14:15.373 2016-01-30T01:21:18.877 172 GSM1363534 SRR1220172.bw HCC-C16-R-14T-16 c("tissue: HCC Non-recurrent Tumor", "individual: HCC-C16", "gender: M", "age: 49", "hbv (pre-olt): Positive", "hbv (post-olt): NA", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 80", "primary tumor size (cm): 5", "primary tumor grade: Ⅱ-Ⅲ", "primary tumor cirrhosis: Yes", "recurrent tumor method: 0", "recurrent tumor organ: 0", "recurrent tumor size (cm): 0", "recurrent tumor content (%): 0", "recurrent tumor grade: 0", "recurrent tumor cirrhosis: 0", "glu: 4.89", "alt: 52", "ast: 140", "ggt: 68.9", "tb: 64.9", "db: 23.2", "alb: 30", "hgb: 92", "pt: 14.9", "hbsag: >240", "hbvdna: <500", "afp: 128.9", "cea: 2.11", "ca199: 29.5", "bclc stage pre-ltx: A3", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589601 SRX512229 SRR1220160 103013940 98749770 0.958605893532 TRUE TRUE 98687597 8870100052 NA NA 2014-04-07T10:12:39.870 2016-01-30T01:14:08.267 2016-01-30T01:21:21.897 172 GSM1363522 SRR1220160.bw HCC8-R-13T-8 c("tissue: HCC Recurrent Tumor", "individual: HCC8", "gender: M", "age: 42", "hbv (pre-olt): Positive", "hbv (post-olt): Negative", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 90", "primary tumor size (cm): 10", "primary tumor grade: III", "primary tumor cirrhosis: Yes", "recurrent tumor method: RFA", "recurrent tumor organ: liver", "recurrent tumor size (cm): 1.2", "recurrent tumor content (%): NA", "recurrent tumor grade: NA", "recurrent tumor cirrhosis: NA", "glu: 5.1", "alt: 87", "ast: 65", "ggt: 380.2", "tb: 22.2", "db: 5.8", "alb: 39.3", "hgb: 139", "pt: 12.1", "hbsag: >250(+)", "hbvdna: <500", "afp: >3000", "cea: 1.85", "ca199: 44.8", "bclc stage pre-ltx: B", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589599 SRX512228 SRR1220159 91554780 87241701 0.95289072837 TRUE TRUE 87125875 7830797132 NA NA 2014-04-07T10:12:50.563 2016-01-30T01:14:07.027 2016-01-30T01:21:22.410 171 GSM1363521 SRR1220159.bw HCC8-R-13P-8 c("tissue: HCC Recurrent Tumor's Adjacent Normal", "individual: HCC8", "gender: M", "age: 42", "hbv (pre-olt): Positive", "hbv (post-olt): Negative", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 90", "primary tumor size (cm): 10", "primary tumor grade: III", "primary tumor cirrhosis: Yes", "recurrent tumor method: RFA", "recurrent tumor organ: liver", "recurrent tumor size (cm): 1.2", "recurrent tumor content (%): NA", "recurrent tumor grade: NA", "recurrent tumor cirrhosis: NA", "glu: 5.1", "alt: 87", "ast: 65", "ggt: 380.2", "tb: 22.2", "db: 5.8", "alb: 39.3", "hgb: 139", "pt: 12.1", "hbsag: >250(+)", "hbvdna: <500", "afp: >3000", "cea: 1.85", "ca199: 44.8", "bclc stage pre-ltx: B", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589591 SRX512220 SRR1220151 103458920 98531442 0.952372613207 TRUE TRUE 98472839 8848966419 NA NA 2014-04-07T10:12:35.387 2016-01-30T01:13:58.300 2016-01-30T01:17:02.873 171 GSM1363513 SRR1220151.bw HCC4-R-13P-4 c("tissue: HCC Recurrent Tumor's Adjacent Normal", "individual: HCC4", "gender: M", "age: 59", "hbv (pre-olt): Positive", "hbv (post-olt): Positive", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 90", "primary tumor size (cm): 8", "primary tumor grade: II", "primary tumor cirrhosis: No", "recurrent tumor method: RFA", "recurrent tumor organ: liver", "recurrent tumor size (cm): 2.5", "recurrent tumor content (%): NA", "recurrent tumor grade: NA", "recurrent tumor cirrhosis: No", "glu: 5.4", "alt: 20", "ast: 19", "ggt: 37.7", "tb: 17.4", "db: 3.9", "alb: 43.7", "hgb: 145", "pt: 11.6", "hbsag: 15.22(+)", "hbvdna: <500", "afp: 2.5", "cea: 1.27", "ca199: 8.4", "bclc stage pre-ltx: B", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein") SRP040998 SRS589589 SRX512218 SRR1220149 102605724 97611548 0.95132653613 TRUE TRUE 97546871 8765660927 NA NA 2014-04-07T10:11:57.183 2016-01-30T01:13:56.390 2016-01-30T01:17:03.377 171 GSM1363511 SRR1220149.bw HCC3-R-13P-3 c("tissue: HCC Recurrent Tumor's Adjacent Normal", "individual: HCC3", "gender: M", "age: 42", "hbv (pre-olt): Positive", "hbv (post-olt): Negative", "primary tumor and nat rna: Yes", "primary tumor biopsy method: OLT", "primary tumor content (%): 80", "primary tumor size (cm): 6", "primary tumor grade: III", "primary tumor cirrhosis: Yes", "recurrent tumor method: RFA", "recurrent tumor organ: liver", "recurrent tumor size (cm): 1.5", "recurrent tumor content (%): NA", "recurrent tumor grade: NA", "recurrent tumor cirrhosis: Yes", "glu: 7.23", "alt: 30", "ast: 56", "ggt: 198.7", "tb: 34.8", "db: 15.5", "alb: 33.9", "hgb: 144", "pt: 12.3", "hbsag: >240(+)", "hbvdna: <500", "afp: >3000", "cea: 3.3", "ca199: 119.8", "bclc stage pre-ltx: B", "definitions: RFA=Radiofrequency ablation; VATS=Video-assisted thorascopic surgery; OLT=Orthotopic liver transplantation; AFP=Alpha-fetoprotein")