project sample experiment run read_count_as_reported_by_sra reads_downloaded proportion_of_reads_reported_by_sra_downloaded paired_end sra_misreported_paired_end mapped_read_count auc sharq_beta_tissue sharq_beta_cell_type biosample_submission_date biosample_publication_date biosample_update_date avg_read_length geo_accession bigwig_file title characteristics SRP057852 SRS926485 SRX1014881 SRR2003831 278441 278441 1 FALSE FALSE 211596 8880054 NA NA 2015-04-30T15:52:11.000 2015-05-20T01:26:20.120 2015-05-20T01:29:29.257 46 GSM1671955 SRR2003831.bw Subject20_PBMC c("collection site and cell type: PBMC APC", "bacterial community type: Prevotella dominant", "cell type: Antigen presenting cells") SRP057852 SRS926486 SRX1014880 SRR2003830 703653 703653 1 FALSE FALSE 340159 13231603 NA NA 2015-04-30T15:52:10.000 2015-05-20T01:26:18.667 2015-05-20T01:29:28.867 46 GSM1671954 SRR2003830.bw Subject20_Cervical c("collection site and cell type: Cervical APC", "bacterial community type: Prevotella dominant", "cell type: Antigen presenting cells") SRP057852 SRS926487 SRX1014879 SRR2003829 515991 515991 1 FALSE FALSE 359480 15022833 NA NA 2015-04-30T15:53:07.000 2015-05-20T01:26:17.703 2015-05-20T01:29:28.450 46 GSM1671953 SRR2003829.bw Subject19_PBMC c("collection site and cell type: PBMC APC", "bacterial community type: Gardnerella dominant", "cell type: Antigen presenting cells") SRP057852 SRS926488 SRX1014878 SRR2003828 849492 849492 1 FALSE FALSE 581764 24470043 NA NA 2015-04-30T15:52:58.000 2015-05-20T01:26:16.723 2015-05-20T01:29:27.977 46 GSM1671952 SRR2003828.bw Subject19_Cervical c("collection site and cell type: Cervical APC", "bacterial community type: Gardnerella dominant", "cell type: Antigen presenting cells") SRP057852 SRS926489 SRX1014877 SRR2003827 229005 229005 1 FALSE FALSE 175890 7397776 NA NA 2015-04-30T15:52:56.000 2015-05-20T01:26:26.980 2015-05-20T01:29:27.473 46 GSM1671951 SRR2003827.bw Subject18_PBMC c("collection site and cell type: PBMC APC", "bacterial community type: Gardnerella dominant", "cell type: Antigen presenting cells") SRP057852 SRS926490 SRX1014876 SRR2003826 421032 421032 1 FALSE FALSE 265074 11114746 NA NA 2015-04-30T15:52:55.000 2015-05-20T01:26:25.937 2015-05-20T01:29:26.933 46 GSM1671950 SRR2003826.bw Subject18_Cervical c("collection site and cell type: Cervical APC", "bacterial community type: Gardnerella dominant", "cell type: Antigen presenting cells") SRP057852 SRS926491 SRX1014875 SRR2003825 456254 456254 1 FALSE FALSE 335822 14423522 NA NA 2015-04-30T15:52:53.000 2015-05-20T01:26:24.330 2015-05-20T01:29:26.523 46 GSM1671949 SRR2003825.bw Subject17_PBMC c("collection site and cell type: PBMC APC", "bacterial community type: Gardnerella dominant", "cell type: Antigen presenting cells") SRP057852 SRS926492 SRX1014874 SRR2003824 378944 378944 1 FALSE FALSE 203665 8276587 NA NA 2015-04-30T15:52:52.000 2015-05-20T01:26:23.220 2015-05-20T01:29:26.150 46 GSM1671948 SRR2003824.bw Subject17_Cervical c("collection site and cell type: Cervical APC", "bacterial community type: Gardnerella dominant", "cell type: Antigen presenting cells") SRP057852 SRS926493 SRX1014873 SRR2003823 230795 230795 1 FALSE FALSE 173085 7467534 NA NA 2015-04-30T15:52:51.000 2015-05-20T01:26:22.300 2015-05-20T01:29:25.797 46 GSM1671947 SRR2003823.bw Subject16_PBMC c("collection site and cell type: PBMC APC", "bacterial community type: Lactobacillus dominant", "cell type: Antigen presenting cells") SRP057852 SRS926494 SRX1014872 SRR2003822 3355448 3355448 1 FALSE FALSE 2285014 96293577 NA NA 2015-04-30T15:52:49.000 2015-05-20T01:26:21.253 2015-05-20T01:29:25.390 46 GSM1671946 SRR2003822.bw Subject16_Cervical c("collection site and cell type: Cervical APC", "bacterial community type: Lactobacillus dominant", "cell type: Antigen presenting cells") SRP057852 SRS926495 SRX1014871 SRR2003821 1309783 1309783 1 FALSE FALSE 879624 36947164 NA NA 2015-04-30T15:52:47.000 2015-05-20T01:26:15.100 2015-05-20T01:29:24.977 46 GSM1671945 SRR2003821.bw Subject15_Cervical c("collection site and cell type: Cervical APC", "bacterial community type: Lactobacillus dominant", "cell type: Antigen presenting cells") SRP057852 SRS926496 SRX1014870 SRR2003820 193555 193555 1 FALSE FALSE 145457 6257168 NA NA 2015-04-30T15:52:45.000 2015-05-20T01:26:13.900 2015-05-20T01:29:24.570 46 GSM1671944 SRR2003820.bw Subject14_PBMC c("collection site and cell type: PBMC APC", "bacterial community type: Lactobacillus dominant", "cell type: Antigen presenting cells") SRP057852 SRS926498 SRX1014868 SRR2003818 87740 87740 1 FALSE FALSE 62656 2674307 NA NA 2015-04-30T15:52:42.000 2015-05-20T01:26:11.060 2015-05-20T01:29:23.580 46 GSM1671942 SRR2003818.bw Subject13_PBMC c("collection site and cell type: PBMC APC", "bacterial community type: Gardnerella dominant", "cell type: Antigen presenting cells") SRP057852 SRS926499 SRX1014867 SRR2003817 898734 898734 1 FALSE FALSE 589134 24706111 NA NA 2015-04-30T15:52:41.000 2015-05-20T01:26:09.963 2015-05-20T01:29:23.200 46 GSM1671941 SRR2003817.bw Subject13_Cervical c("collection site and cell type: Cervical APC", "bacterial community type: Gardnerella dominant", "cell type: Antigen presenting cells") SRP057852 SRS926500 SRX1014866 SRR2003816 1553719 1553719 1 FALSE FALSE 1195273 51410765 NA NA 2015-04-30T15:52:38.000 2015-05-20T01:26:08.950 2015-05-20T01:29:22.683 46 GSM1671940 SRR2003816.bw Subject12_Cervical c("collection site and cell type: Cervical APC", "bacterial community type: Gardnerella dominant", "cell type: Antigen presenting cells") SRP057852 SRS926501 SRX1014865 SRR2003815 659375 659375 1 FALSE FALSE 469431 19576627 NA NA 2015-04-30T15:52:37.000 2015-05-20T01:26:07.627 2015-05-20T01:29:22.140 46 GSM1671939 SRR2003815.bw Subject11_PBMC c("collection site and cell type: PBMC APC", "bacterial community type: Prevotella dominant", "cell type: Antigen presenting cells") SRP057852 SRS926502 SRX1014864 SRR2003814 3718928 3718928 1 FALSE FALSE 2525116 106251649 NA NA 2015-04-30T15:52:36.000 2015-05-20T01:26:05.463 2015-05-20T01:29:21.810 46 GSM1671938 SRR2003814.bw Subject11_Cervical c("collection site and cell type: Cervical APC", "bacterial community type: Prevotella dominant", "cell type: Antigen presenting cells") SRP057852 SRS926503 SRX1014863 SRR2003813 1264301 1264301 1 FALSE FALSE 900217 37509938 NA NA 2015-04-30T15:52:34.000 2015-05-20T01:26:33.157 2015-05-20T01:29:21.240 46 GSM1671937 SRR2003813.bw Subject10_PBMC c("collection site and cell type: PBMC APC", "bacterial community type: Gardnerella dominant", "cell type: Antigen presenting cells") SRP057852 SRS926504 SRX1014862 SRR2003812 364263 364263 1 FALSE FALSE 250546 10602720 NA NA 2015-04-30T15:52:32.000 2015-05-20T01:26:38.920 2015-05-20T01:29:20.900 46 GSM1671936 SRR2003812.bw Subject10_Cervical c("collection site and cell type: Cervical APC", "bacterial community type: Gardnerella dominant", "cell type: Antigen presenting cells") SRP057852 SRS926505 SRX1014861 SRR2003811 272952 272952 1 FALSE FALSE 211035 8940055 NA NA 2015-04-30T15:52:30.000 2015-05-20T01:26:40.217 2015-05-20T01:29:20.607 46 GSM1671935 SRR2003811.bw Subject9_PBMC c("collection site and cell type: PBMC APC", "bacterial community type: Gardnerella dominant", "cell type: Antigen presenting cells") SRP057852 SRS926506 SRX1014860 SRR2003810 467569 467569 1 FALSE FALSE 287912 11963664 NA NA 2015-04-30T15:52:29.000 2015-05-20T01:26:41.597 2015-05-20T01:29:20.333 46 GSM1671934 SRR2003810.bw Subject9_Cervical c("collection site and cell type: Cervical APC", "bacterial community type: Gardnerella dominant", "cell type: Antigen presenting cells") SRP057852 SRS926507 SRX1014859 SRR2003809 996381 996381 1 FALSE FALSE 662804 28059633 NA NA 2015-04-30T15:52:28.000 2015-05-20T01:26:42.613 2015-05-20T01:29:19.943 46 GSM1671933 SRR2003809.bw Subject8_PBMC c("collection site and cell type: PBMC APC", "bacterial community type: Lactobacillus dominant", "cell type: Antigen presenting cells") SRP057852 SRS926508 SRX1014858 SRR2003808 352169 352169 1 FALSE FALSE 245729 10406083 NA NA 2015-04-30T15:52:25.000 2015-05-20T01:26:45.057 2015-05-20T01:29:19.613 46 GSM1671932 SRR2003808.bw Subject7_PBMC c("collection site and cell type: PBMC APC", "bacterial community type: Prevotella dominant", "cell type: Antigen presenting cells") SRP057852 SRS926509 SRX1014857 SRR2003807 1868197 1868197 1 FALSE FALSE 1209189 50578503 NA NA 2015-04-30T15:52:23.000 2015-05-20T01:26:43.977 2015-05-20T01:29:19.103 46 GSM1671931 SRR2003807.bw Subject7_Cervical c("collection site and cell type: Cervical APC", "bacterial community type: Prevotella dominant", "cell type: Antigen presenting cells") SRP057852 SRS926510 SRX1014856 SRR2003806 178487 178487 1 FALSE FALSE 125233 5297426 NA NA 2015-04-30T15:52:22.000 2015-05-20T01:26:47.990 2015-05-20T01:29:18.793 46 GSM1671930 SRR2003806.bw Subject6_PBMC c("collection site and cell type: PBMC APC", "bacterial community type: Prevotella dominant", "cell type: Antigen presenting cells") SRP057852 SRS926511 SRX1014855 SRR2003805 1114644 1114644 1 FALSE FALSE 847896 36314095 NA NA 2015-04-30T15:52:20.000 2015-05-20T01:26:46.613 2015-05-20T01:29:18.537 46 GSM1671929 SRR2003805.bw Subject6_Cervical c("collection site and cell type: Cervical APC", "bacterial community type: Prevotella dominant", "cell type: Antigen presenting cells") SRP057852 SRS926512 SRX1014854 SRR2003804 426953 426953 1 FALSE FALSE 282812 11883153 NA NA 2015-04-30T15:52:19.000 2015-05-20T01:26:48.960 2015-05-20T01:29:18.253 46 GSM1671928 SRR2003804.bw Subject5_PBMC c("collection site and cell type: PBMC APC", "bacterial community type: Lactobacillus dominant", "cell type: Antigen presenting cells") SRP057852 SRS926513 SRX1014853 SRR2003803 396565 396565 1 FALSE FALSE 229517 9259859 NA NA 2015-04-30T15:52:17.000 2015-05-20T01:27:06.657 2015-05-20T01:29:17.910 46 GSM1671927 SRR2003803.bw Subject4_Cervical c("collection site and cell type: Cervical APC", "bacterial community type: Prevotella dominant", "cell type: Antigen presenting cells") SRP057852 SRS926515 SRX1014851 SRR2003802 1251545 1251545 1 FALSE FALSE 873391 37226482 NA NA 2015-04-30T15:52:16.000 2015-05-20T01:27:05.603 2015-05-20T01:29:17.593 46 GSM1671926 SRR2003802.bw Subject3_Cervical c("collection site and cell type: Cervical APC", "bacterial community type: Gardnerella dominant", "cell type: Antigen presenting cells") SRP057852 SRS926516 SRX1014850 SRR2003801 512127 512127 1 FALSE FALSE 354121 15084802 NA NA 2015-04-30T15:52:14.000 2015-05-20T01:27:04.580 2015-05-20T01:29:17.250 46 GSM1671925 SRR2003801.bw Subject2_Cervical c("collection site and cell type: Cervical APC", "bacterial community type: Lactobacillus dominant", "cell type: Antigen presenting cells") SRP057852 SRS926517 SRX1014849 SRR2003800 637279 637279 1 FALSE FALSE 438773 18564892 NA NA 2015-04-30T15:52:13.000 2015-05-20T01:26:53.290 2015-05-20T01:29:16.897 46 GSM1671924 SRR2003800.bw Subject1_Cervical c("collection site and cell type: Cervical APC", "bacterial community type: Lactobacillus dominant", "cell type: Antigen presenting cells") SRP057852 SRS926497 SRX1014869 SRR2003819 1461411 0 0 FALSE FALSE 0 NA NA NA 2015-04-30T15:52:43.000 2015-05-20T01:26:12.237 2015-05-20T01:29:24.003 46 GSM1671943 NA Subject14_Cervical c("collection site and cell type: Cervical APC", "bacterial community type: Lactobacillus dominant", "cell type: Antigen presenting cells")