/software/centos7/bin/time -v snakemake -j 20 --stats ./perstudy.jxs.stats.json --snakefile /storage2/cwilks/recount-unify/Snakefile.study_jxs -p --config input=links staging=unified_jxs annotated_sjs=/storage2/cwilks/recount-pump-refs/hg38_unify/annotated_junctions.tsv.gz ref_sizes=/storage2/cwilks/recount-pump-refs/hg38_unify/recount_pump.chr_sizes.tsv ref_fasta=/storage2/cwilks/recount-pump-refs/hg38_unify/recount_pump.fa sample_ids_file=ids.tsv compilation_id=102 build_sqlitedb=1 compilation=sra study_dir=junction_counts_per_study