{ "total_runtime": 2705.0946011543274, "rules": { "find_sjs": { "mean-runtime": 10.553364276885986, "min-runtime": 10.553364276885986, "max-runtime": 10.553364276885986 }, "filter_sjs": { "mean-runtime": 334.31540060043335, "min-runtime": 8.309021234512329, "max-runtime": 660.3217799663544 }, "merge_sjs": { "mean-runtime": 747.8333020806313, "min-runtime": 8.506611585617065, "max-runtime": 1553.1059277057648 }, "collect_merged_sjs": { "mean-runtime": 3.139680862426758, "min-runtime": 0.06023859977722168, "max-runtime": 6.219123125076294 }, "merge_study_sjs": { "mean-runtime": 13.396963357925415, "min-runtime": 12.858322858810425, "max-runtime": 13.935603857040405 }, "extract_motifs_for_sjs": { "mean-runtime": 18.88787865638733, "min-runtime": 18.091914653778076, "max-runtime": 19.683842658996582 }, "annotate_study_sjs": { "mean-runtime": 68.97614884376526, "min-runtime": 67.51151752471924, "max-runtime": 70.44078016281128 }, "mmformat_sjs": { "mean-runtime": 386.4486907720566, "min-runtime": 377.5296907424927, "max-runtime": 395.3676908016205 }, "collect_per_study_sjs": { "mean-runtime": 0.023761272430419922, "min-runtime": 0.023761272430419922, "max-runtime": 0.023761272430419922 }, "merge_per_study_sjs": { "mean-runtime": 16.803852081298828, "min-runtime": 16.803852081298828, "max-runtime": 16.803852081298828 }, "collect_study_merged_sjs": { "mean-runtime": 0.7949354648590088, "min-runtime": 0.7949354648590088, "max-runtime": 0.7949354648590088 }, "merge_all_sjs": { "mean-runtime": 13.613052129745483, "min-runtime": 13.613052129745483, "max-runtime": 13.613052129745483 }, "annotate_all_sjs": { "mean-runtime": 112.79723238945007, "min-runtime": 112.79723238945007, "max-runtime": 112.79723238945007 }, "final_recount_output": { "mean-runtime": 0.5019023418426514, "min-runtime": 0.5019023418426514, "max-runtime": 0.5019023418426514 }, "all": { "mean-runtime": 0.0009875297546386719, "min-runtime": 0.0009875297546386719, "max-runtime": 0.0009875297546386719 } }, "files": { "unified_jxs/sj.groups.manifest": { "start-time": "Mon Dec 14 21:03:23 2020", "stop-time": "Mon Dec 14 21:03:33 2020", "duration": 10.553364276885986, "priority": 0, "resources": { "_cores": 1, "_nodes": 1 } }, "unified_jxs/sj.lieber_phase2_hippo.00.manifest.filtered": { "start-time": "Mon Dec 14 21:03:33 2020", "stop-time": "Mon Dec 14 21:14:34 2020", "duration": 660.3217799663544, "priority": 0, "resources": { "_cores": 1, "_nodes": 1 } }, "unified_jxs/sj.lieber_phase2_hippo.08.manifest.filtered": { "start-time": "Mon Dec 14 21:03:33 2020", "stop-time": "Mon Dec 14 21:03:42 2020", "duration": 8.309021234512329, "priority": 0, "resources": { "_cores": 1, "_nodes": 1 } }, "unified_jxs/sj.lieber_phase2_hippo.08.unique.merged": { "start-time": "Mon Dec 14 21:03:42 2020", "stop-time": "Mon Dec 14 21:03:50 2020", "duration": 8.506611585617065, "priority": 0, "resources": { "_cores": 8, "_nodes": 1 } }, "unified_jxs/sj.lieber_phase2_hippo.08.all.merged": { "start-time": "Mon Dec 14 21:03:42 2020", "stop-time": "Mon Dec 14 21:03:50 2020", "duration": 8.590674638748169, "priority": 0, "resources": { "_cores": 8, "_nodes": 1 } }, "unified_jxs/sj.lieber_phase2_hippo.00.all.merged": { "start-time": "Mon Dec 14 21:14:34 2020", "stop-time": "Mon Dec 14 21:40:27 2020", "duration": 1553.1059277057648, "priority": 0, "resources": { "_cores": 8, "_nodes": 1 } }, "unified_jxs/sj.lieber_phase2_hippo.00.unique.merged": { "start-time": "Mon Dec 14 21:14:34 2020", "stop-time": "Mon Dec 14 21:38:15 2020", "duration": 1421.129994392395, "priority": 0, "resources": { "_cores": 8, "_nodes": 1 } }, "unified_jxs/sj.lieber_phase2_hippo.unique.groups.merged.files.list": { "start-time": "Mon Dec 14 21:38:15 2020", "stop-time": "Mon Dec 14 21:38:21 2020", "duration": 6.219123125076294, "priority": 0, "resources": { "_cores": 1, "_nodes": 1 } }, "unified_jxs/all.lieber_phase2_hippo.unique.sjs.merged": { "start-time": "Mon Dec 14 21:38:21 2020", "stop-time": "Mon Dec 14 21:38:35 2020", "duration": 13.935603857040405, "priority": 0, "resources": { "_cores": 8, "_nodes": 1 } }, "unified_jxs/all.lieber_phase2_hippo.unique.sjs.merged.motifs": { "start-time": "Mon Dec 14 21:38:35 2020", "stop-time": "Mon Dec 14 21:38:53 2020", "duration": 18.091914653778076, "priority": 0, "resources": { "_cores": 1, "_nodes": 1 } }, "junction_counts_per_study/lieber_phase2_hippo.unique.sj.merged.motifs.annotated": { "start-time": "Mon Dec 14 21:38:53 2020", "stop-time": "Mon Dec 14 21:40:01 2020", "duration": 67.51151752471924, "priority": 0, "resources": { "_cores": 1, "_nodes": 1 } }, "junction_counts_per_study/sra.junctions.lieber_phase2_hippo.unique.MM.gz": { "start-time": "Mon Dec 14 21:40:01 2020", "stop-time": "Mon Dec 14 21:46:36 2020", "duration": 395.3676908016205, "priority": 0, "resources": { "_cores": 2, "_nodes": 1 } }, "junction_counts_per_study/sra.junctions.lieber_phase2_hippo.unique.RR.gz": { "start-time": "Mon Dec 14 21:40:01 2020", "stop-time": "Mon Dec 14 21:46:36 2020", "duration": 395.3676908016205, "priority": 0, "resources": { "_cores": 2, "_nodes": 1 } }, "junction_counts_per_study/sra.junctions.lieber_phase2_hippo.unique.ID.gz": { "start-time": "Mon Dec 14 21:40:01 2020", "stop-time": "Mon Dec 14 21:46:36 2020", "duration": 395.3676908016205, "priority": 0, "resources": { "_cores": 2, "_nodes": 1 } }, "unified_jxs/sj.lieber_phase2_hippo.all.groups.merged.files.list": { "start-time": "Mon Dec 14 21:40:27 2020", "stop-time": "Mon Dec 14 21:40:27 2020", "duration": 0.06023859977722168, "priority": 0, "resources": { "_cores": 1, "_nodes": 1 } }, "unified_jxs/all.lieber_phase2_hippo.all.sjs.merged": { "start-time": "Mon Dec 14 21:40:27 2020", "stop-time": "Mon Dec 14 21:40:40 2020", "duration": 12.858322858810425, "priority": 0, "resources": { "_cores": 8, "_nodes": 1 } }, "unified_jxs/all.lieber_phase2_hippo.all.sjs.merged.motifs": { "start-time": "Mon Dec 14 21:40:40 2020", "stop-time": "Mon Dec 14 21:41:00 2020", "duration": 19.683842658996582, "priority": 0, "resources": { "_cores": 1, "_nodes": 1 } }, "unified_jxs/sj.po.manifest": { "start-time": "Mon Dec 14 21:41:00 2020", "stop-time": "Mon Dec 14 21:41:00 2020", "duration": 0.023761272430419922, "priority": 0, "resources": { "_cores": 1, "_nodes": 1 } }, "junction_counts_per_study/lieber_phase2_hippo.all.sj.merged.motifs.annotated": { "start-time": "Mon Dec 14 21:41:00 2020", "stop-time": "Mon Dec 14 21:42:10 2020", "duration": 70.44078016281128, "priority": 0, "resources": { "_cores": 1, "_nodes": 1 } }, "unified_jxs/sj.po.motifs.merged.tsv": { "start-time": "Mon Dec 14 21:41:00 2020", "stop-time": "Mon Dec 14 21:41:16 2020", "duration": 16.803852081298828, "priority": 0, "resources": { "_cores": 8, "_nodes": 1 } }, "unified_jxs/sj.all.merged.files.list": { "start-time": "Mon Dec 14 21:41:16 2020", "stop-time": "Mon Dec 14 21:41:17 2020", "duration": 0.7949354648590088, "priority": 0, "resources": { "_cores": 1, "_nodes": 1 } }, "all.sjs.motifs.merged.tsv": { "start-time": "Mon Dec 14 21:41:17 2020", "stop-time": "Mon Dec 14 21:41:31 2020", "duration": 13.613052129745483, "priority": 0, "resources": { "_cores": 1, "_nodes": 1 } }, "junctions.bgz": { "start-time": "Mon Dec 14 21:41:31 2020", "stop-time": "Mon Dec 14 21:43:24 2020", "duration": 112.79723238945007, "priority": 0, "resources": { "_cores": 7, "_nodes": 1 } }, "junctions.bgz.tbi": { "start-time": "Mon Dec 14 21:41:31 2020", "stop-time": "Mon Dec 14 21:43:24 2020", "duration": 112.79723238945007, "priority": 0, "resources": { "_cores": 7, "_nodes": 1 } }, "junctions.sqlite": { "start-time": "Mon Dec 14 21:41:31 2020", "stop-time": "Mon Dec 14 21:43:24 2020", "duration": 112.79723238945007, "priority": 0, "resources": { "_cores": 7, "_nodes": 1 } }, "samples.tsv": { "start-time": "Mon Dec 14 21:41:31 2020", "stop-time": "Mon Dec 14 21:43:24 2020", "duration": 112.79723238945007, "priority": 0, "resources": { "_cores": 7, "_nodes": 1 } }, "lucene_indexed_numeric_types.tsv": { "start-time": "Mon Dec 14 21:41:31 2020", "stop-time": "Mon Dec 14 21:43:24 2020", "duration": 112.79723238945007, "priority": 0, "resources": { "_cores": 7, "_nodes": 1 } }, "lucene_full_standard": { "start-time": "Mon Dec 14 21:41:31 2020", "stop-time": "Mon Dec 14 21:43:24 2020", "duration": 112.79723238945007, "priority": 0, "resources": { "_cores": 7, "_nodes": 1 } }, "lucene_full_ws": { "start-time": "Mon Dec 14 21:41:31 2020", "stop-time": "Mon Dec 14 21:43:24 2020", "duration": 112.79723238945007, "priority": 0, "resources": { "_cores": 7, "_nodes": 1 } }, "samples.fields.tsv": { "start-time": "Mon Dec 14 21:41:31 2020", "stop-time": "Mon Dec 14 21:43:24 2020", "duration": 112.79723238945007, "priority": 0, "resources": { "_cores": 7, "_nodes": 1 } }, "junction_counts_per_study/sra.junctions.lieber_phase2_hippo.all.MM.gz": { "start-time": "Mon Dec 14 21:42:10 2020", "stop-time": "Mon Dec 14 21:48:27 2020", "duration": 377.5296907424927, "priority": 0, "resources": { "_cores": 2, "_nodes": 1 } }, "junction_counts_per_study/sra.junctions.lieber_phase2_hippo.all.RR.gz": { "start-time": "Mon Dec 14 21:42:10 2020", "stop-time": "Mon Dec 14 21:48:27 2020", "duration": 377.5296907424927, "priority": 0, "resources": { "_cores": 2, "_nodes": 1 } }, "junction_counts_per_study/sra.junctions.lieber_phase2_hippo.all.ID.gz": { "start-time": "Mon Dec 14 21:42:10 2020", "stop-time": "Mon Dec 14 21:48:27 2020", "duration": 377.5296907424927, "priority": 0, "resources": { "_cores": 2, "_nodes": 1 } }, "junction_counts_per_study/po/lieber_phase2_hippo/sra.junctions.lieber_phase2_hippo.all.MM.gz": { "start-time": "Mon Dec 14 21:48:27 2020", "stop-time": "Mon Dec 14 21:48:28 2020", "duration": 0.5019023418426514, "priority": 0, "resources": { "_cores": 1, "_nodes": 1 } }, "junction_counts_per_study/po/lieber_phase2_hippo/sra.junctions.lieber_phase2_hippo.all.RR.gz": { "start-time": "Mon Dec 14 21:48:27 2020", "stop-time": "Mon Dec 14 21:48:28 2020", "duration": 0.5019023418426514, "priority": 0, "resources": { "_cores": 1, "_nodes": 1 } }, "junction_counts_per_study/po/lieber_phase2_hippo/sra.junctions.lieber_phase2_hippo.all.ID.gz": { "start-time": "Mon Dec 14 21:48:27 2020", "stop-time": "Mon Dec 14 21:48:28 2020", "duration": 0.5019023418426514, "priority": 0, "resources": { "_cores": 1, "_nodes": 1 } }, "junction_counts_per_study/po/lieber_phase2_hippo/sra.junctions.lieber_phase2_hippo.unique.MM.gz": { "start-time": "Mon Dec 14 21:48:27 2020", "stop-time": "Mon Dec 14 21:48:28 2020", "duration": 0.5019023418426514, "priority": 0, "resources": { "_cores": 1, "_nodes": 1 } }, "junction_counts_per_study/po/lieber_phase2_hippo/sra.junctions.lieber_phase2_hippo.unique.RR.gz": { "start-time": "Mon Dec 14 21:48:27 2020", "stop-time": "Mon Dec 14 21:48:28 2020", "duration": 0.5019023418426514, "priority": 0, "resources": { "_cores": 1, "_nodes": 1 } }, "junction_counts_per_study/po/lieber_phase2_hippo/sra.junctions.lieber_phase2_hippo.unique.ID.gz": { "start-time": "Mon Dec 14 21:48:27 2020", "stop-time": "Mon Dec 14 21:48:28 2020", "duration": 0.5019023418426514, "priority": 0, "resources": { "_cores": 1, "_nodes": 1 } } } }