cat ~/langmead/recount-unify/jx.id.header /home/cwilks3/langmead/recount-unify/supers/tcga/junctions/sids/ACC.all.sj.merged.motifs.annotated.all.sids | gzip > ../junctions/CC/ACC/tcga.junctions.ACC.ALL.ID.gz
cat ~/langmead/recount-unify/jx.id.header /home/cwilks3/langmead/recount-unify/supers/tcga/junctions/sids/BLCA.all.sj.merged.motifs.annotated.all.sids | gzip > ../junctions/CA/BLCA/tcga.junctions.BLCA.ALL.ID.gz
cat ~/langmead/recount-unify/jx.id.header /home/cwilks3/langmead/recount-unify/supers/tcga/junctions/sids/BRCA.all.sj.merged.motifs.annotated.all.sids | gzip > ../junctions/CA/BRCA/tcga.junctions.BRCA.ALL.ID.gz
cat ~/langmead/recount-unify/jx.id.header /home/cwilks3/langmead/recount-unify/supers/tcga/junctions/sids/CESC.all.sj.merged.motifs.annotated.all.sids | gzip > ../junctions/SC/CESC/tcga.junctions.CESC.ALL.ID.gz
cat ~/langmead/recount-unify/jx.id.header /home/cwilks3/langmead/recount-unify/supers/tcga/junctions/sids/CHOL.all.sj.merged.motifs.annotated.all.sids | gzip > ../junctions/OL/CHOL/tcga.junctions.CHOL.ALL.ID.gz
cat ~/langmead/recount-unify/jx.id.header /home/cwilks3/langmead/recount-unify/supers/tcga/junctions/sids/COAD.all.sj.merged.motifs.annotated.all.sids | gzip > ../junctions/AD/COAD/tcga.junctions.COAD.ALL.ID.gz
cat ~/langmead/recount-unify/jx.id.header /home/cwilks3/langmead/recount-unify/supers/tcga/junctions/sids/DLBC.all.sj.merged.motifs.annotated.all.sids | gzip > ../junctions/BC/DLBC/tcga.junctions.DLBC.ALL.ID.gz
cat ~/langmead/recount-unify/jx.id.header /home/cwilks3/langmead/recount-unify/supers/tcga/junctions/sids/ESCA.all.sj.merged.motifs.annotated.all.sids | gzip > ../junctions/CA/ESCA/tcga.junctions.ESCA.ALL.ID.gz
cat ~/langmead/recount-unify/jx.id.header /home/cwilks3/langmead/recount-unify/supers/tcga/junctions/sids/GBM.all.sj.merged.motifs.annotated.all.sids | gzip > ../junctions/BM/GBM/tcga.junctions.GBM.ALL.ID.gz
cat ~/langmead/recount-unify/jx.id.header /home/cwilks3/langmead/recount-unify/supers/tcga/junctions/sids/HNSC.all.sj.merged.motifs.annotated.all.sids | gzip > ../junctions/SC/HNSC/tcga.junctions.HNSC.ALL.ID.gz
cat ~/langmead/recount-unify/jx.id.header /home/cwilks3/langmead/recount-unify/supers/tcga/junctions/sids/KICH.all.sj.merged.motifs.annotated.all.sids | gzip > ../junctions/CH/KICH/tcga.junctions.KICH.ALL.ID.gz
cat ~/langmead/recount-unify/jx.id.header /home/cwilks3/langmead/recount-unify/supers/tcga/junctions/sids/KIRC.all.sj.merged.motifs.annotated.all.sids | gzip > ../junctions/RC/KIRC/tcga.junctions.KIRC.ALL.ID.gz
cat ~/langmead/recount-unify/jx.id.header /home/cwilks3/langmead/recount-unify/supers/tcga/junctions/sids/KIRP.all.sj.merged.motifs.annotated.all.sids | gzip > ../junctions/RP/KIRP/tcga.junctions.KIRP.ALL.ID.gz
cat ~/langmead/recount-unify/jx.id.header /home/cwilks3/langmead/recount-unify/supers/tcga/junctions/sids/LAML.all.sj.merged.motifs.annotated.all.sids | gzip > ../junctions/ML/LAML/tcga.junctions.LAML.ALL.ID.gz
cat ~/langmead/recount-unify/jx.id.header /home/cwilks3/langmead/recount-unify/supers/tcga/junctions/sids/LGG.all.sj.merged.motifs.annotated.all.sids | gzip > ../junctions/GG/LGG/tcga.junctions.LGG.ALL.ID.gz
cat ~/langmead/recount-unify/jx.id.header /home/cwilks3/langmead/recount-unify/supers/tcga/junctions/sids/LIHC.all.sj.merged.motifs.annotated.all.sids | gzip > ../junctions/HC/LIHC/tcga.junctions.LIHC.ALL.ID.gz
cat ~/langmead/recount-unify/jx.id.header /home/cwilks3/langmead/recount-unify/supers/tcga/junctions/sids/LUAD.all.sj.merged.motifs.annotated.all.sids | gzip > ../junctions/AD/LUAD/tcga.junctions.LUAD.ALL.ID.gz
cat ~/langmead/recount-unify/jx.id.header /home/cwilks3/langmead/recount-unify/supers/tcga/junctions/sids/LUSC.all.sj.merged.motifs.annotated.all.sids | gzip > ../junctions/SC/LUSC/tcga.junctions.LUSC.ALL.ID.gz
cat ~/langmead/recount-unify/jx.id.header /home/cwilks3/langmead/recount-unify/supers/tcga/junctions/sids/MESO.all.sj.merged.motifs.annotated.all.sids | gzip > ../junctions/SO/MESO/tcga.junctions.MESO.ALL.ID.gz
cat ~/langmead/recount-unify/jx.id.header /home/cwilks3/langmead/recount-unify/supers/tcga/junctions/sids/NA.all.sj.merged.motifs.annotated.all.sids | gzip > ../junctions/NA/NA/tcga.junctions.NA.ALL.ID.gz
cat ~/langmead/recount-unify/jx.id.header /home/cwilks3/langmead/recount-unify/supers/tcga/junctions/sids/OV.all.sj.merged.motifs.annotated.all.sids | gzip > ../junctions/OV/OV/tcga.junctions.OV.ALL.ID.gz
cat ~/langmead/recount-unify/jx.id.header /home/cwilks3/langmead/recount-unify/supers/tcga/junctions/sids/PAAD.all.sj.merged.motifs.annotated.all.sids | gzip > ../junctions/AD/PAAD/tcga.junctions.PAAD.ALL.ID.gz
cat ~/langmead/recount-unify/jx.id.header /home/cwilks3/langmead/recount-unify/supers/tcga/junctions/sids/PCPG.all.sj.merged.motifs.annotated.all.sids | gzip > ../junctions/PG/PCPG/tcga.junctions.PCPG.ALL.ID.gz
cat ~/langmead/recount-unify/jx.id.header /home/cwilks3/langmead/recount-unify/supers/tcga/junctions/sids/PRAD.all.sj.merged.motifs.annotated.all.sids | gzip > ../junctions/AD/PRAD/tcga.junctions.PRAD.ALL.ID.gz
cat ~/langmead/recount-unify/jx.id.header /home/cwilks3/langmead/recount-unify/supers/tcga/junctions/sids/READ.all.sj.merged.motifs.annotated.all.sids | gzip > ../junctions/AD/READ/tcga.junctions.READ.ALL.ID.gz
cat ~/langmead/recount-unify/jx.id.header /home/cwilks3/langmead/recount-unify/supers/tcga/junctions/sids/SARC.all.sj.merged.motifs.annotated.all.sids | gzip > ../junctions/RC/SARC/tcga.junctions.SARC.ALL.ID.gz
cat ~/langmead/recount-unify/jx.id.header /home/cwilks3/langmead/recount-unify/supers/tcga/junctions/sids/SKCM.all.sj.merged.motifs.annotated.all.sids | gzip > ../junctions/CM/SKCM/tcga.junctions.SKCM.ALL.ID.gz
cat ~/langmead/recount-unify/jx.id.header /home/cwilks3/langmead/recount-unify/supers/tcga/junctions/sids/STAD.all.sj.merged.motifs.annotated.all.sids | gzip > ../junctions/AD/STAD/tcga.junctions.STAD.ALL.ID.gz
cat ~/langmead/recount-unify/jx.id.header /home/cwilks3/langmead/recount-unify/supers/tcga/junctions/sids/TGCT.all.sj.merged.motifs.annotated.all.sids | gzip > ../junctions/CT/TGCT/tcga.junctions.TGCT.ALL.ID.gz
cat ~/langmead/recount-unify/jx.id.header /home/cwilks3/langmead/recount-unify/supers/tcga/junctions/sids/THCA.all.sj.merged.motifs.annotated.all.sids | gzip > ../junctions/CA/THCA/tcga.junctions.THCA.ALL.ID.gz
cat ~/langmead/recount-unify/jx.id.header /home/cwilks3/langmead/recount-unify/supers/tcga/junctions/sids/THYM.all.sj.merged.motifs.annotated.all.sids | gzip > ../junctions/YM/THYM/tcga.junctions.THYM.ALL.ID.gz
cat ~/langmead/recount-unify/jx.id.header /home/cwilks3/langmead/recount-unify/supers/tcga/junctions/sids/UCEC.all.sj.merged.motifs.annotated.all.sids | gzip > ../junctions/EC/UCEC/tcga.junctions.UCEC.ALL.ID.gz
cat ~/langmead/recount-unify/jx.id.header /home/cwilks3/langmead/recount-unify/supers/tcga/junctions/sids/UCS.all.sj.merged.motifs.annotated.all.sids | gzip > ../junctions/CS/UCS/tcga.junctions.UCS.ALL.ID.gz
cat ~/langmead/recount-unify/jx.id.header /home/cwilks3/langmead/recount-unify/supers/tcga/junctions/sids/UVM.all.sj.merged.motifs.annotated.all.sids | gzip > ../junctions/VM/UVM/tcga.junctions.UVM.ALL.ID.gz